Variant report

Variant	rs4325808
Chromosome Location	chr2:100289828-100289829
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10167100	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10182731	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11123791	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11123792	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11676683	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11901863	0.80[ASN][1000 genomes]
rs12474603	0.84[ASN][1000 genomes]
rs12712052	0.86[ASN][1000 genomes]
rs1524366	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1916959	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2030689	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2309728	0.83[ASN][1000 genomes]
rs4384839	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4410333	0.80[ASN][1000 genomes]
rs4611689	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4850908	0.86[ASN][1000 genomes]
rs4850911	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4850912	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4851222	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6542886	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6709165	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6719965	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6720070	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6734773	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6758962	0.85[EUR][1000 genomes]
rs72817062	0.82[EUR][1000 genomes]
rs7560182	0.80[ASN][1000 genomes]
rs7561948	0.81[ASN][1000 genomes]
rs7566953	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9308828	0.85[EUR][1000 genomes]
rs9679019	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431424	chr2:99652682-100494682	Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv962113	chr2:100022168-100317461	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1003343	chr2:100241560-100848900	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv535843	chr2:100241560-100848900	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:100253200-100308800	Weak transcription	Gastric	stomach
2	chr2:100257600-100308600	Weak transcription	Thymus	Thymus
3	chr2:100264000-100328600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr2:100274200-100297400	Weak transcription	Liver	Liver
5	chr2:100275800-100291000	Weak transcription	Lung	lung
6	chr2:100276400-100302000	Weak transcription	Left Ventricle	heart
7	chr2:100276600-100295800	Weak transcription	Right Atrium	heart
8	chr2:100279400-100295000	Weak transcription	Fetal Brain Male	brain
9	chr2:100282600-100308600	Weak transcription	Ovary	ovary
10	chr2:100282800-100291400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr2:100285800-100290800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr2:100286000-100294000	Weak transcription	Fetal Brain Female	brain
13	chr2:100286000-100297800	Weak transcription	Primary hematopoietic stem cells	blood
14	chr2:100286000-100301000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr2:100286000-100305600	Weak transcription	Fetal Thymus	thymus
16	chr2:100286600-100336800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr2:100286800-100290200	Weak transcription	Primary T cells from cord blood	blood
18	chr2:100287000-100298200	Weak transcription	Dnd41	blood
19	chr2:100287800-100290200	Genic enhancers	Primary B cells from cord blood	blood
20	chr2:100287800-100291600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr2:100288000-100291800	Weak transcription	Right Ventricle	heart
22	chr2:100288200-100291400	Enhancers	Primary B cells from peripheral blood	blood
23	chr2:100288400-100296800	Weak transcription	NH-A	brain
24	chr2:100288800-100290400	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr2:100288800-100290400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr2:100288800-100302200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr2:100289000-100290200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr2:100289000-100300400	Weak transcription	Fetal Muscle Leg	muscle
29	chr2:100289400-100290400	Enhancers	Pancreas	Pancrea
30	chr2:100289400-100291200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr2:100289400-100295600	Weak transcription	Fetal Heart	heart
32	chr2:100289600-100290400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr2:100289600-100290400	Enhancers	Placenta	Placenta
34	chr2:100289800-100296400	Weak transcription	Fetal Lung	lung

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