Variant report

Variant	rs4327753
Chromosome Location	chr7:3372249-3372250
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 136 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:114)

rs_ID	r²[population]
rs10215256	0.81[CEU][hapmap]
rs10224769	0.95[ASN][1000 genomes]
rs10228151	0.84[CEU][hapmap];0.86[CHB][hapmap]
rs10228723	0.99[ASN][1000 genomes]
rs10232431	0.89[CEU][hapmap]
rs10233166	0.83[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs10238520	0.91[ASN][1000 genomes]
rs10243467	0.96[CEU][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10250421	0.81[CEU][hapmap];0.91[CHB][hapmap]
rs10250444	0.82[CEU][hapmap];0.86[CHB][hapmap];0.83[ASN][1000 genomes]
rs10254665	0.82[CEU][hapmap]
rs10257982	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10258501	0.82[CEU][hapmap];0.90[CHB][hapmap]
rs10260145	0.99[ASN][1000 genomes]
rs10261250	0.92[ASN][1000 genomes]
rs10261912	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10266047	0.89[CEU][hapmap];0.91[CHB][hapmap]
rs10268249	0.95[ASN][1000 genomes]
rs10268837	0.92[CEU][hapmap];0.89[CHB][hapmap]
rs10271803	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10276190	0.99[ASN][1000 genomes]
rs10276933	0.83[CEU][hapmap];0.87[CHB][hapmap];0.84[ASN][1000 genomes]
rs10807838	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10951155	0.86[CHB][hapmap];0.84[ASN][1000 genomes]
rs10951159	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1112428	0.83[CEU][hapmap];0.87[CHB][hapmap];0.83[ASN][1000 genomes]
rs11974620	0.97[ASN][1000 genomes]
rs12056172	0.86[CHB][hapmap]
rs12537113	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12537528	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12537549	0.99[ASN][1000 genomes]
rs12540305	0.95[ASN][1000 genomes]
rs12700789	0.83[CEU][hapmap];0.86[CHB][hapmap];0.82[ASN][1000 genomes]
rs13221852	0.84[CEU][hapmap]
rs13224926	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13230698	0.99[ASN][1000 genomes]
rs1357311	1.00[CEU][hapmap]
rs1403158	0.89[CEU][hapmap];0.91[CHB][hapmap]
rs1525556	0.83[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs1525557	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17133334	0.82[CHB][hapmap]
rs1996824	0.83[AMR][1000 genomes]
rs2340848	1.00[CEU][hapmap]
rs34608458	0.98[ASN][1000 genomes]
rs34735349	0.99[ASN][1000 genomes]
rs4131987	0.81[CEU][hapmap];0.91[CHB][hapmap];0.83[ASN][1000 genomes]
rs4255031	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4295560	0.98[ASN][1000 genomes]
rs4298408	0.82[ASN][1000 genomes]
rs4316064	0.82[CEU][hapmap];0.86[CHB][hapmap];0.83[ASN][1000 genomes]
rs4320450	0.86[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs4336505	0.99[ASN][1000 genomes]
rs4349886	0.99[ASN][1000 genomes]
rs4358698	0.93[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4385365	0.84[ASN][1000 genomes]
rs4443553	0.81[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4495320	0.86[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs4499989	0.96[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4506106	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4521670	0.80[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4544975	0.81[CEU][hapmap];0.91[CHB][hapmap];0.82[ASN][1000 genomes]
rs4588749	0.98[ASN][1000 genomes]
rs4607498	0.85[CEU][hapmap];0.91[CHB][hapmap];0.84[ASN][1000 genomes]
rs4719883	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4719894	0.81[CEU][hapmap];0.91[CHB][hapmap];0.83[ASN][1000 genomes]
rs4719944	0.89[CEU][hapmap]
rs4722654	0.92[CEU][hapmap];0.80[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4722655	0.98[ASN][1000 genomes]
rs4722663	0.82[CEU][hapmap];0.86[CHB][hapmap];0.84[ASN][1000 genomes]
rs4722673	0.83[CEU][hapmap];0.98[ASN][1000 genomes]
rs4722674	0.98[ASN][1000 genomes]
rs4722693	0.82[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4722696	0.96[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4722708	0.96[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4722709	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4722710	0.83[ASN][1000 genomes]
rs4722712	0.81[ASN][1000 genomes]
rs4722853	0.85[CEU][hapmap]
rs6461983	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6461993	0.98[ASN][1000 genomes]
rs6461994	0.82[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs6462030	0.91[CHB][hapmap];0.80[ASN][1000 genomes]
rs6462094	1.00[CEU][hapmap]
rs6651070	0.89[CEU][hapmap]
rs67586312	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6949513	0.89[CEU][hapmap]
rs6958390	0.97[ASN][1000 genomes]
rs6959232	0.86[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6959702	0.98[ASN][1000 genomes]
rs6962796	0.96[CEU][hapmap]
rs6964838	0.89[CEU][hapmap]
rs6965684	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6966619	0.82[CEU][hapmap];0.86[CHB][hapmap];0.84[ASN][1000 genomes]
rs6974075	0.83[ASN][1000 genomes]
rs6980323	0.98[ASN][1000 genomes]
rs7780027	0.82[ASN][1000 genomes]
rs7785994	0.82[CEU][hapmap];0.86[CHB][hapmap];0.84[ASN][1000 genomes]
rs7789887	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7791617	0.89[CEU][hapmap]
rs7791820	0.98[ASN][1000 genomes]
rs7794279	0.98[ASN][1000 genomes]
rs7797018	0.95[CEU][hapmap];0.90[CHB][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7798418	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7798672	0.97[ASN][1000 genomes]
rs7802250	0.89[CEU][hapmap];0.91[CHB][hapmap]
rs7803004	0.84[CEU][hapmap];0.86[CHB][hapmap]
rs7803993	0.83[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7811244	0.82[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7811286	1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs885011	0.85[CEU][hapmap]
rs9648354	0.85[CEU][hapmap]
rs9969270	0.87[CHB][hapmap]
rs9986894	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9986896	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023127	chr7:3216344-3466223	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1018173	chr7:3258989-3879848	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv538660	chr7:3258989-3879848	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2758100	chr7:3286625-3560229	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv2759500	chr7:3286625-3560229	Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1016555	chr7:3298478-3872512	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv538661	chr7:3298478-3872512	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1019515	chr7:3300048-3479972	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv887324	chr7:3308195-3400105	Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv605892	chr7:3341589-3424878	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv1020764	chr7:3348458-3554820	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	nsv538662	chr7:3348458-3554820	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
13	nsv1019492	chr7:3359294-3479972	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
14	nsv538663	chr7:3359294-3479972	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
15	esv2757204	chr7:3359491-3460355	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
16	nsv1028585	chr7:3364990-3400105	Enhancers Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
17	nsv1030484	chr7:3364990-3506102	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
18	esv2764026	chr7:3365002-3618361	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
19	nsv1018105	chr7:3365441-3506102	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
20	nsv1026361	chr7:3366960-3502600	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
21	nsv538664	chr7:3366960-3502600	Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
22	nsv605893	chr7:3368197-3505231	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:3359000-3385800	Weak transcription	Pancreas	Pancrea
2	chr7:3363400-3377800	Weak transcription	Aorta	Aorta
3	chr7:3366800-3372600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr7:3367800-3373000	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr7:3372000-3372800	Enhancers	Colon Smooth Muscle	Colon

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