Variant report
Variant | rs433156 |
---|---|
Chromosome Location | chr2:77627119-77627120 |
allele | A/C |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10520185 | 0.88[CEU][hapmap];0.80[CHB][hapmap];0.91[JPT][hapmap] |
rs11126606 | 0.88[CEU][hapmap];0.91[JPT][hapmap] |
rs11676547 | 0.87[CEU][hapmap] |
rs11693018 | 0.87[CEU][hapmap];0.84[JPT][hapmap] |
rs13025831 | 0.92[CEU][hapmap] |
rs1796454 | 0.81[ASN][1000 genomes] |
rs290016 | 0.82[CEU][hapmap];0.85[CHB][hapmap];0.85[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs290017 | 0.82[CEU][hapmap];0.90[CHB][hapmap];0.83[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.91[TSI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs290018 | 0.85[CHB][hapmap];0.83[CHD][hapmap];0.83[JPT][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs290020 | 0.81[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs290024 | 0.85[CHB][hapmap];0.81[EUR][1000 genomes] |
rs290025 | 0.80[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs290027 | 0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs290028 | 0.85[CHB][hapmap];0.80[CHD][hapmap];0.83[JPT][hapmap];0.81[TSI][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs290029 | 0.81[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs290030 | 0.81[EUR][1000 genomes] |
rs290032 | 0.92[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs290033 | 0.81[EUR][1000 genomes] |
rs290034 | 0.85[CEU][hapmap] |
rs378029 | 0.81[EUR][1000 genomes] |
rs407079 | 0.81[EUR][1000 genomes] |
rs415838 | 0.92[CEU][hapmap];0.85[CHB][hapmap];0.86[CHD][hapmap];0.82[GIH][hapmap];0.90[JPT][hapmap];0.98[TSI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs427294 | 0.81[EUR][1000 genomes] |
rs435044 | 0.92[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs438081 | 0.82[AMR][1000 genomes];0.82[ASN][1000 genomes] |
rs438859 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs619530 | 0.82[CEU][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs694136 | 0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv949670 | chr2:77125218-77712607 | Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
2 | nsv874333 | chr2:77315349-77798886 | Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
3 | nsv518504 | chr2:77326832-78172786 | Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
4 | nsv1004938 | chr2:77347740-78186543 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
5 | nsv535783 | chr2:77347740-78186543 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
6 | nsv529904 | chr2:77347741-78186542 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
7 | nsv997329 | chr2:77354560-78176285 | Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
8 | nsv834267 | chr2:77534499-77708336 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
9 | nsv470473 | chr2:77564243-77633888 | Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
10 | nsv1004097 | chr2:77575188-77706008 | Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
11 | nsv535784 | chr2:77575188-77706008 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr2:77624000-77628000 | Weak transcription | HUES64 Cell Line | embryonic stem cell |
2 | chr2:77626600-77627200 | Enhancers | Pancreatic Islets | Pancreatic Islet |
3 | chr2:77626600-77627800 | Enhancers | Fetal Lung | lung |
4 | chr2:77626800-77628400 | Enhancers | iPS-15b Cell Line | embryonic stem cell |