Variant report

Variant	rs4332372
Chromosome Location	chr1:161257358-161257359
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:161243431..161244989-chr1:161257310..161259716,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 8 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11265585	0.81[EUR][1000 genomes]
rs2501879	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[ASN][1000 genomes]
rs4278382	1.00[ASN][1000 genomes]
rs4330937	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530077	chr1:160836448-161284904	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv432986	chr1:161221133-161673682	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

mRNA abundance (count:8)

SNP	Gene	Cis/trans	Tissue	Source
rs4332372	FCRLB	cis	parietal	SCAN
rs4332372	OR10R2	cis	parietal	SCAN
rs4332372	KIAA0907	cis	parietal	SCAN
rs4332372	PPOX	cis	parietal	SCAN
rs4332372	OR6K3	cis	cerebellum	SCAN
rs4332372	PIGM	cis	parietal	SCAN
rs4332372	DCAF8	cis	parietal	SCAN
rs4332372	LMNA	cis	parietal	SCAN

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:161238200-161257600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr1:161243000-161261200	Weak transcription	Brain Substantia Nigra	brain
3	chr1:161243200-161264000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr1:161250400-161274200	Weak transcription	Fetal Stomach	stomach
5	chr1:161252400-161274800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr1:161254400-161261200	Weak transcription	Brain Anterior Caudate	brain
7	chr1:161255200-161274800	Weak transcription	Lung	lung
8	chr1:161255600-161260000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr1:161255600-161261200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr1:161255600-161274600	Weak transcription	Adipose Nuclei	Adipose
11	chr1:161255800-161259800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr1:161255800-161260800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr1:161255800-161261000	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr1:161255800-161261200	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr1:161256400-161272800	Weak transcription	Primary T cells from cord blood	blood
16	chr1:161256800-161257600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
17	chr1:161257000-161258200	Enhancers	Fetal Intestine Large	intestine
18	chr1:161257000-161258200	Enhancers	HepG2	liver
19	chr1:161257200-161257600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr1:161257200-161258200	Enhancers	Fetal Intestine Small	intestine
21	chr1:161257200-161258400	Enhancers	Stomach Mucosa	stomach

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