Variant report

Variant	rs4332504
Chromosome Location	chr11:6090332-6090333
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr11:6090160-6090479	MCF10A-Er-Src	breast:	n/a	n/a
2	POLR2A	chr11:6090233-6090398	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
OR52X1P	TF binding region

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10500654	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10742949	0.96[ASN][1000 genomes]
rs10839353	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10839361	0.84[EUR][1000 genomes]
rs10839362	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10839477	0.81[EUR][1000 genomes]
rs10839478	0.81[EUR][1000 genomes]
rs10839479	0.80[EUR][1000 genomes]
rs11040512	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11040552	0.82[EUR][1000 genomes]
rs11040555	0.81[EUR][1000 genomes]
rs11040556	0.82[EUR][1000 genomes]
rs11040558	0.83[EUR][1000 genomes]
rs11040594	0.82[EUR][1000 genomes]
rs11040648	0.82[EUR][1000 genomes]
rs11040649	0.82[EUR][1000 genomes]
rs11040650	0.82[EUR][1000 genomes]
rs11040652	0.82[EUR][1000 genomes]
rs11040653	0.82[EUR][1000 genomes]
rs11040709	0.81[EUR][1000 genomes]
rs11040713	0.81[EUR][1000 genomes]
rs11040714	0.81[EUR][1000 genomes]
rs11040715	0.81[EUR][1000 genomes]
rs11040717	0.81[EUR][1000 genomes]
rs11511999	0.82[EUR][1000 genomes]
rs1462982	0.81[EUR][1000 genomes]
rs4306279	0.96[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4310587	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4353251	0.93[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4362124	0.82[EUR][1000 genomes]
rs4570555	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4604856	0.82[EUR][1000 genomes]
rs4758077	0.82[EUR][1000 genomes]
rs4758079	0.82[EUR][1000 genomes]
rs4758080	0.82[EUR][1000 genomes]
rs4758379	0.82[EUR][1000 genomes]
rs6578736	0.81[EUR][1000 genomes]
rs6578737	0.81[EUR][1000 genomes]
rs7106139	0.81[EUR][1000 genomes]
rs7106179	0.81[EUR][1000 genomes]
rs7114613	0.81[EUR][1000 genomes]
rs7114866	0.81[EUR][1000 genomes]
rs7117092	0.81[EUR][1000 genomes]
rs7117349	0.81[EUR][1000 genomes]
rs7122336	0.80[EUR][1000 genomes]
rs7479778	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7929888	0.80[EUR][1000 genomes]
rs7932413	0.81[EUR][1000 genomes]
rs7941058	0.81[EUR][1000 genomes]
rs7943059	0.81[EUR][1000 genomes]
rs7943285	0.81[EUR][1000 genomes]
rs7948696	0.96[ASN][1000 genomes]
rs7952121	0.81[EUR][1000 genomes]
rs7952132	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553241	chr11:5506034-6203685	Genic enhancers Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv530216	chr11:5614439-6468232	Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv1036389	chr11:5695451-6177680	Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
4	nsv540943	chr11:5695451-6177680	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
5	nsv1052156	chr11:6003428-6107778	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
6	nsv1047794	chr11:6003428-6116105	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
7	nsv1038674	chr11:6058703-6090372	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	esv19708	chr11:6076999-6117545	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:6086600-6090400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:6090000-6090400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:6090000-6091200	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr11:6090000-6091200	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr11:6090000-6091800	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr11:6090200-6090400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr11:6090200-6090800	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr11:6090200-6091000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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