Variant report

Variant	rs4333674
Chromosome Location	chr9:96933960-96933961
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr9:96933867-96934326	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr9:96933308..96934893-chr9:96957370..96959656,2	MCF-7	breast:
2	chr9:96829354..96831525-chr9:96932462..96934545,2	K562	blood:
3	chr9:96827846..96829961-chr9:96932041..96934679,2	MCF-7	breast:
4	chr9:96845064..96846581-chr9:96932043..96934956,2	K562	blood:

Variant related genes	Relation type
MIRLET7F1	TF binding region
MIRLET7A1	TF binding region
ENSG00000269929	TF binding region

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10993081	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10993082	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10993083	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10993089	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10993091	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10993099	0.83[AFR][1000 genomes]
rs1362820	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3909252	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9792534	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482457	chr9:96813852-96996170	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	217 gene(s)	inside rSNPs	diseases
2	nsv831655	chr9:96834042-97042009	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	218 gene(s)	inside rSNPs	diseases
3	esv3435412	chr9:96924949-96935312	Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96929600-96936400	Weak transcription	Gastric	stomach
2	chr9:96929600-96938800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr9:96929800-96936000	Weak transcription	Esophagus	oesophagus
4	chr9:96929800-96944800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr9:96929800-96948400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:96930000-96936200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr9:96930400-96935400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr9:96930400-96938200	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr9:96930600-96934800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr9:96930600-96935400	Weak transcription	Fetal Thymus	thymus
11	chr9:96930600-96935600	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr9:96930600-96935800	Weak transcription	Placenta	Placenta
13	chr9:96930600-96937600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr9:96930600-96943600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr9:96930600-96943800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr9:96931000-96934600	Enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr9:96931000-96935400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
18	chr9:96931000-96935400	Enhancers	Colon Smooth Muscle	Colon
19	chr9:96931000-96936000	Enhancers	Primary T helper cells fromperipheralblood	blood
20	chr9:96931000-96937200	Enhancers	Fetal Heart	heart
21	chr9:96931200-96934400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr9:96931200-96934600	Enhancers	Brain Hippocampus Middle	brain
23	chr9:96931200-96935400	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr9:96931200-96935400	Enhancers	Stomach Smooth Muscle	stomach
25	chr9:96931200-96935600	Enhancers	Liver	Liver
26	chr9:96931200-96935600	Weak transcription	Stomach Mucosa	stomach
27	chr9:96931200-96936000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr9:96931200-96936000	Weak transcription	Primary neutrophils fromperipheralblood	blood
29	chr9:96931200-96936400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr9:96931200-96938200	Enhancers	Skeletal Muscle Male	skeletal muscle
31	chr9:96931200-96938800	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr9:96931400-96935800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr9:96931400-96965600	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr9:96931800-96934400	Enhancers	Rectal Smooth Muscle	rectum
35	chr9:96931800-96934600	Enhancers	HepG2	liver
36	chr9:96931800-96935800	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr9:96931800-96936000	Enhancers	Adipose Nuclei	Adipose
38	chr9:96931800-96936000	Weak transcription	Thymus	Thymus
39	chr9:96931800-96939000	Weak transcription	Fetal Brain Male	brain
40	chr9:96932000-96936400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr9:96932000-96938200	Enhancers	Brain Anterior Caudate	brain
42	chr9:96932200-96935200	Enhancers	Rectal Mucosa Donor 31	rectum
43	chr9:96932200-96935600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr9:96932200-96935800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr9:96932200-96936000	Weak transcription	HSMMtube	muscle
46	chr9:96932400-96934200	Enhancers	Primary B cells from cord blood	blood
47	chr9:96932400-96934400	Weak transcription	Fetal Brain Female	brain
48	chr9:96932400-96935400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
49	chr9:96932400-96935600	Enhancers	Primary T helper cells PMA-I stimulated	--
50	chr9:96932400-96935600	Weak transcription	Brain Germinal Matrix	brain

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