Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10127516	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10874903	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11576940	0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11810584	0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12562498	0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12563154	0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12717801	0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12724815	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12743370	0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs3890845	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4309031	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4314930	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4556411	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4623755	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4950059	0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4950070	0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6593667	0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6593670	0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6669249	0.81[ASN][1000 genomes]
rs6690421	0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7512953	0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7541757	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7546710	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9437816	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830636	chr1:95495849-95703126	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95539000-95541600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr1:95539200-95541600	Weak transcription	Colonic Mucosa	Colon
3	chr1:95539400-95542000	Enhancers	HepG2	liver
4	chr1:95539800-95549000	Weak transcription	K562	blood
5	chr1:95540600-95542000	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr1:95541000-95541600	Enhancers	A549	lung
7	chr1:95541000-95541800	Enhancers	Rectal Mucosa Donor 29	rectum

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