Variant report

Variant	rs433612
Chromosome Location	chr5:100757536-100757537
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10041018	0.81[EUR][1000 genomes]
rs10043033	0.81[EUR][1000 genomes]
rs10044820	0.86[EUR][1000 genomes]
rs10052707	0.83[EUR][1000 genomes]
rs10063903	0.83[EUR][1000 genomes]
rs10072890	0.88[EUR][1000 genomes]
rs10074812	0.83[EUR][1000 genomes]
rs10076351	0.86[EUR][1000 genomes]
rs10080017	0.83[EUR][1000 genomes]
rs1037792	0.87[EUR][1000 genomes]
rs10477689	0.82[EUR][1000 genomes]
rs10477696	0.84[EUR][1000 genomes]
rs1158113	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12513973	0.89[EUR][1000 genomes]
rs12519280	0.89[EUR][1000 genomes]
rs12519607	0.87[EUR][1000 genomes]
rs12521794	0.89[EUR][1000 genomes]
rs12521888	0.86[EUR][1000 genomes]
rs12522389	0.89[EUR][1000 genomes]
rs13354178	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13354196	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13355008	0.87[EUR][1000 genomes]
rs13358232	0.81[EUR][1000 genomes]
rs13360799	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13362183	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1352745	0.87[EUR][1000 genomes]
rs1352746	0.87[EUR][1000 genomes]
rs1352747	0.87[EUR][1000 genomes]
rs1380392	0.83[EUR][1000 genomes]
rs1380398	0.87[EUR][1000 genomes]
rs1380399	0.87[EUR][1000 genomes]
rs1388202	0.88[EUR][1000 genomes]
rs1459571	0.81[EUR][1000 genomes]
rs1459578	0.83[EUR][1000 genomes]
rs1459579	0.83[EUR][1000 genomes]
rs1459587	0.87[EUR][1000 genomes]
rs1459588	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1459589	0.87[EUR][1000 genomes]
rs1459590	0.87[EUR][1000 genomes]
rs1459591	0.87[EUR][1000 genomes]
rs1542456	0.89[EUR][1000 genomes]
rs17134979	0.87[EUR][1000 genomes]
rs17135177	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17135179	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17135180	0.89[EUR][1000 genomes]
rs17135187	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17839479	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2125714	0.86[EUR][1000 genomes]
rs28552573	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57720420	0.81[EUR][1000 genomes]
rs57727638	0.81[EUR][1000 genomes]
rs60396950	0.80[EUR][1000 genomes]
rs6868173	0.89[EUR][1000 genomes]
rs6868195	0.89[EUR][1000 genomes]
rs6887156	0.89[EUR][1000 genomes]
rs6896184	0.89[EUR][1000 genomes]
rs72782850	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72782893	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs898289	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs898290	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs898291	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs898292	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs898297	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462320	chr5:100247554-100775607	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv599176	chr5:100247554-100775607	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv528811	chr5:100424081-101218087	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1032191	chr5:100455166-100852106	Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv516292	chr5:100490972-100925684	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv2758007	chr5:100507726-100760722	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv2759360	chr5:100507726-100760722	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv882479	chr5:100587626-100941372	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv882481	chr5:100599227-100759281	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv599179	chr5:100609923-100826324	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv2755981	chr5:100633738-100830395	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv882490	chr5:100640721-100826324	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv1026979	chr5:100714105-100761775	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv1026682	chr5:100718781-100758839	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv1026990	chr5:100718781-100761775	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv1035047	chr5:100719864-100761775	Weak transcription Flanking Active TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv1023977	chr5:100719864-100766804	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv1033577	chr5:100722701-100761775	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv1017670	chr5:100722701-100766804	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
20	nsv1026104	chr5:100723151-100761775	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
21	nsv1022955	chr5:100732031-100758839	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
22	nsv1024075	chr5:100756024-100822258	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
23	nsv432792	chr5:100756024-100867529	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:100754800-100758600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr5:100754800-100759400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr5:100755000-100759200	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr5:100755000-100759400	Weak transcription	NHDF-Ad	bronchial
5	chr5:100755200-100760400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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