Variant report
| Variant | rs4337809 |
|---|---|
| Chromosome Location | chr5:61318693-61318694 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs10058486 | 0.99[ASN][1000 genomes] |
| rs10062059 | 0.99[ASN][1000 genomes] |
| rs10214027 | 0.99[ASN][1000 genomes] |
| rs13175940 | 0.98[ASN][1000 genomes] |
| rs13177362 | 1.00[ASN][1000 genomes] |
| rs13180268 | 0.98[ASN][1000 genomes] |
| rs1445884 | 0.98[ASN][1000 genomes] |
| rs1445886 | 0.93[ASN][1000 genomes] |
| rs1816097 | 0.99[ASN][1000 genomes] |
| rs1820157 | 1.00[ASN][1000 genomes] |
| rs1820159 | 0.98[ASN][1000 genomes] |
| rs1833868 | 1.00[ASN][1000 genomes] |
| rs1972650 | 0.97[ASN][1000 genomes] |
| rs1972651 | 0.97[ASN][1000 genomes] |
| rs2032875 | 1.00[ASN][1000 genomes] |
| rs2166371 | 0.99[ASN][1000 genomes] |
| rs2342989 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2342990 | 0.99[ASN][1000 genomes] |
| rs3843448 | 0.98[ASN][1000 genomes] |
| rs4273560 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4273561 | 1.00[ASN][1000 genomes] |
| rs4301180 | 1.00[ASN][1000 genomes] |
| rs4699997 | 0.98[ASN][1000 genomes] |
| rs4700456 | 1.00[ASN][1000 genomes] |
| rs4700457 | 1.00[ASN][1000 genomes] |
| rs4700463 | 0.97[ASN][1000 genomes] |
| rs6869741 | 1.00[ASN][1000 genomes] |
| rs6874917 | 1.00[ASN][1000 genomes] |
| rs7712508 | 1.00[ASN][1000 genomes] |
| rs7734412 | 0.93[ASN][1000 genomes] |
| rs889275 | 0.99[ASN][1000 genomes] |
| rs918616 | 0.99[ASN][1000 genomes] |
| rs9291745 | 0.93[ASN][1000 genomes] |
| rs968159 | 0.99[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1020693 | chr5:61098865-61357032 | Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv1024090 | chr5:61258759-61921150 | Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 36 gene(s) | inside rSNPs | diseases |
| 3 | nsv881725 | chr5:61265820-61376320 | Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 4 | nsv508363 | chr5:61287078-61362885 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | nsv830317 | chr5:61298840-61478113 | Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:61306800-61324400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
