Variant report

Variant	rs4339711
Chromosome Location	chr9:117924195-117924196
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12115269	0.85[JPT][hapmap]
rs1414139	0.85[JPT][hapmap]
rs1537723	0.85[JPT][hapmap]
rs1537724	0.85[JPT][hapmap]
rs1537725	0.85[JPT][hapmap]
rs1537726	0.85[JPT][hapmap]
rs1591420	0.85[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16932313	0.85[JPT][hapmap]
rs55967508	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72760452	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72760458	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72760460	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs953140	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv615250	chr9:117768021-118012841	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv916912	chr9:117770039-118014140	Flanking Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv831697	chr9:117860416-118023927	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv6681	chr9:117893926-117938609	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117920400-117925800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr9:117920400-117925800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr9:117920600-117926400	Weak transcription	NHEK	skin
4	chr9:117921400-117926600	Weak transcription	HSMMtube	muscle
5	chr9:117921600-117925800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr9:117921600-117925800	Weak transcription	NHLF	lung
7	chr9:117921600-117926400	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr9:117921600-117926600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr9:117921600-117926800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr9:117921800-117926800	Weak transcription	Fetal Muscle Leg	muscle
11	chr9:117922000-117924800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr9:117922000-117925800	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr9:117922000-117944600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr9:117923000-117924200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr9:117923000-117924800	Enhancers	Fetal Intestine Small	intestine
16	chr9:117923400-117927600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr9:117923600-117924200	Enhancers	NHDF-Ad	bronchial
18	chr9:117923800-117924200	Enhancers	Fetal Heart	heart
19	chr9:117923800-117924200	Enhancers	Rectal Smooth Muscle	rectum
20	chr9:117923800-117924400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr9:117923800-117924400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr9:117924000-117924400	Weak transcription	Stomach Smooth Muscle	stomach
23	chr9:117924000-117926400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links