Variant report

Variant	rs4340785
Chromosome Location	chr4:21814545-21814546
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs187237	0.82[AFR][1000 genomes]
rs360689	0.90[AFR][1000 genomes]
rs360699	0.90[AFR][1000 genomes]
rs4235292	0.90[AFR][1000 genomes]
rs4289435	0.90[AFR][1000 genomes]
rs4438750	0.97[AFR][1000 genomes]
rs4696983	0.87[AFR][1000 genomes]
rs4696987	0.81[AFR][1000 genomes]
rs4697240	0.90[AFR][1000 genomes]
rs6448090	0.97[AFR][1000 genomes]
rs6819373	0.97[AFR][1000 genomes]
rs9996615	0.97[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1005221	chr4:21786702-21822000	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21813600-21814600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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