Variant report

Variant	rs4345410
Chromosome Location	chr6:140168836-140168837
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1022603	0.87[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs13214155	0.97[ASN][1000 genomes]
rs2327994	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4401680	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7751170	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7755382	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.85[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7761094	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9385883	0.82[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv830820	chr6:140059279-140255292	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
3	nsv1017015	chr6:140084137-140300565	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1019407	chr6:140087307-140304334	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1022881	chr6:140098646-140172570	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140167000-140169000	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr6:140167200-140169000	Enhancers	Primary hematopoietic stem cells	blood
3	chr6:140167400-140169600	Enhancers	Colon Smooth Muscle	Colon
4	chr6:140167600-140169200	Enhancers	Fetal Heart	heart
5	chr6:140167800-140169000	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr6:140167800-140169000	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr6:140167800-140169000	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr6:140167800-140169400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr6:140167800-140169600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr6:140168000-140169200	Enhancers	Rectal Smooth Muscle	rectum
11	chr6:140168200-140169000	Enhancers	Sigmoid Colon	Sigmoid Colon
12	chr6:140168200-140169800	Enhancers	Fetal Intestine Small	intestine
13	chr6:140168400-140169000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr6:140168400-140170000	Enhancers	Fetal Intestine Large	intestine
15	chr6:140168400-140174000	Weak transcription	Fetal Lung	lung
16	chr6:140168600-140169000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr6:140168600-140169000	Enhancers	Fetal Kidney	kidney
18	chr6:140168600-140169200	Enhancers	Rectal Mucosa Donor 31	rectum
19	chr6:140168600-140170200	Enhancers	Monocytes-CD14+_RO01746	blood
20	chr6:140168800-140173400	Weak transcription	Duodenum Mucosa	Duodenum
21	chr6:140168800-140177000	Weak transcription	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links