Variant report

Variant	rs4348410
Chromosome Location	chr7:109533551-109533552
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1524462	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1524463	1.00[EUR][1000 genomes]
rs1851904	1.00[EUR][1000 genomes]
rs4379386	0.86[AFR][1000 genomes]
rs4730408	1.00[EUR][1000 genomes]
rs6466311	1.00[EUR][1000 genomes]
rs6966578	1.00[EUR][1000 genomes]
rs7800476	1.00[EUR][1000 genomes]
rs7800656	1.00[EUR][1000 genomes]
rs7800931	1.00[EUR][1000 genomes]
rs7802844	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608079	chr7:109098364-109862289	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1015383	chr7:109315812-109585662	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv532177	chr7:109319033-110123840	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv429795	chr7:109349049-109572049	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2758614	chr7:109409980-109607619	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv2759552	chr7:109409980-109607619	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv531405	chr7:109419044-109958007	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1020623	chr7:109451842-109567466	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1023428	chr7:109451842-110185072	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
10	esv1849010	chr7:109459967-109644867	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv1026799	chr7:109470266-109799102	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	nsv888952	chr7:109497935-109554369	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv831095	chr7:109518164-109712240	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:109533200-109533600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr7:109533200-109533600	Active TSS	Stomach Smooth Muscle	stomach
3	chr7:109533200-109533600	Active TSS	NHDF-Ad	bronchial
4	chr7:109533200-109533600	Active TSS	NHLF	lung
5	chr7:109533200-109533800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr7:109533200-109533800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr7:109533200-109533800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr7:109533200-109533800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr7:109533200-109533800	Active TSS	Ovary	ovary
10	chr7:109533200-109534000	Active TSS	A549	lung
11	chr7:109533400-109533600	Flanking Active TSS	Adipose Nuclei	Adipose
12	chr7:109533400-109533800	Active TSS	Pancreatic Islets	Pancreatic Islet
13	chr7:109533400-109533800	Active TSS	Skeletal Muscle Male	skeletal muscle
14	chr7:109533400-109533800	Flanking Active TSS	Hela-S3	cervix
15	chr7:109533400-109533800	Enhancers	HUVEC	blood vessel
16	chr7:109533400-109534000	Active TSS	Right Atrium	heart
17	chr7:109533400-109534000	Enhancers	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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