Variant report

Variant	rs4349165
Chromosome Location	chr16:31854058-31854059
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:31850272..31852376-chr16:31853970..31855938,2	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1034614	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11859426	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11861974	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11862133	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11862739	0.83[ASN][1000 genomes]
rs11864739	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11864893	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11864895	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11865512	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11866346	0.82[EUR][1000 genomes]
rs11866699	0.82[EUR][1000 genomes]
rs11866828	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17535906	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17839515	0.82[EUR][1000 genomes]
rs17839518	0.82[EUR][1000 genomes]
rs17839519	0.82[EUR][1000 genomes]
rs17839521	0.82[EUR][1000 genomes]
rs17839522	0.82[EUR][1000 genomes]
rs17839526	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2239969	0.80[EUR][1000 genomes]
rs2359234	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2884666	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34146726	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3751741	0.82[EUR][1000 genomes]
rs4417563	0.82[EUR][1000 genomes]
rs56935657	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57283435	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57475804	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs59413238	0.82[EUR][1000 genomes]
rs59943641	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60195538	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60286885	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60382362	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61548031	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7187594	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7192946	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7194865	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7195523	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7200637	0.88[EUR][1000 genomes]
rs8046495	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8054672	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8056595	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8057733	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8062014	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv905747	chr16:31394179-31888684	Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	123 gene(s)	inside rSNPs	diseases
2	nsv1067321	chr16:31652036-31959992	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
3	nsv918074	chr16:31669781-31935033	ZNF genes & repeats Weak transcription Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
4	nsv1063037	chr16:31669981-31934894	Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
5	nsv542903	chr16:31669981-31934894	Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
6	esv3446880	chr16:31734687-31891223	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
7	nsv1066522	chr16:31831196-31959992	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:31854000-31855200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell

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