Variant report

Variant	rs4350841
Chromosome Location	chr21:45723628-45723629
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HDAC2	chr21:45723331-45723794	HepG2	liver:	n/a	n/a
2	MYBL2	chr21:45723217-45723837	HepG2	liver:	n/a	n/a
3	MBD4	chr21:45723277-45723773	HepG2	liver:	n/a	n/a
4	POLR2A	chr21:45723276-45723822	HepG2	liver:	n/a	n/a
5	ELF1	chr21:45723379-45723636	HepG2	liver:	n/a	n/a
6	POLR2A	chr21:45723445-45723662	GM12878	blood:	n/a	n/a
7	ARID3A	chr21:45723419-45723660	HepG2	liver:	n/a	n/a
8	RCOR1	chr21:45723466-45723642	HepG2	liver:	n/a	n/a
9	FOXA1	chr21:45723329-45723796	HepG2	liver:	n/a	n/a
10	POLR2A	chr21:45723347-45723707	GM12878	blood:	n/a	n/a
11	POLR2A	chr21:45723245-45723843	HepG2	liver:	n/a	n/a
12	SP1	chr21:45723282-45723782	HepG2	liver:	n/a	chr21:45723421-45723430 chr21:45723520-45723530
13	SIN3AK20	chr21:45723360-45723642	HepG2	liver:	n/a	n/a
14	YY1	chr21:45723231-45723829	HepG2	liver:	n/a	n/a
15	POLR2A	chr21:45723444-45723782	K562	blood:	n/a	n/a
16	HNF4A	chr21:45723354-45723786	HepG2	liver:	n/a	chr21:45723645-45723657 chr21:45723636-45723658 chr21:45723401-45723409
17	MYBL2	chr21:45723287-45723712	HepG2	liver:	n/a	n/a
18	HEY1	chr21:45723198-45723827	HepG2	liver:	n/a	n/a
19	HNF4G	chr21:45723413-45723788	HepG2	liver:	n/a	chr21:45723645-45723657 chr21:45723636-45723658
20	CTCF	chr21:45723620-45723770	WERI-Rb-1	eye:	n/a	chr21:45723718-45723736 chr21:45723725-45723733
21	ZNF384	chr21:45723196-45723742	GM12878	blood:	n/a	n/a
22	NFIC	chr21:45723509-45723895	HepG2	liver:	n/a	n/a
23	CTCF	chr21:45723620-45723770	HBMEC	blood vessel:	n/a	chr21:45723718-45723736 chr21:45723725-45723733
24	FOXA2	chr21:45723347-45723744	HepG2	liver:	n/a	n/a
25	POLR2A	chr21:45723580-45723931	K562	blood:	n/a	n/a
26	TBP	chr21:45723479-45723700	HepG2	liver:	n/a	n/a
27	MXI1	chr21:45723359-45723812	HepG2	liver:	n/a	n/a
28	MYC	chr21:45723380-45723647	HepG2	liver:	n/a	chr21:45723416-45723426
29	POLR2A	chr21:45718604-45723935	HepG2	liver:	n/a	n/a
30	CTCF	chr21:45723520-45723670	HRPEpiC	eye:	n/a	n/a
31	RXRA	chr21:45723322-45723815	HepG2	liver:	n/a	chr21:45723414-45723430
32	RAD21	chr21:45723565-45723759	HepG2	liver:	n/a	n/a
33	POLR2A	chr21:45723409-45723891	PFSK-1	brain:	n/a	n/a
34	CTCF	chr21:45723580-45723730	RPTEC	kidney:	n/a	n/a
35	NFIC	chr21:45723346-45723681	HepG2	liver:	n/a	n/a
36	HNF4A	chr21:45723345-45723762	HepG2	liver:	n/a	chr21:45723645-45723657 chr21:45723636-45723658 chr21:45723401-45723409
37	YY1	chr21:45723321-45723748	HepG2	liver:	n/a	n/a
38	POLR2A	chr21:45723440-45723780	HepG2	liver:	n/a	n/a
39	POLR2A	chr21:45723305-45727210	K562	blood:	n/a	n/a
40	POLR2A	chr21:45723599-45723668	GM12878	blood:	n/a	n/a
41	MAX	chr21:45723283-45723933	HepG2	liver:	n/a	chr21:45723416-45723426
42	POLR2A	chr21:45723332-45723759	HepG2	liver:	n/a	n/a
43	POLR2A	chr21:45723495-45723677	MCF10A-Er-Src	breast:	n/a	n/a
44	HEY1	chr21:45723509-45723775	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr21:45658941..45665769-chr21:45718013..45724632,19	MCF-7	breast:
2	chr21:45524250..45528671-chr21:45720289..45724952,5	MCF-7	breast:
3	chr21:45431787..45433957-chr21:45722035..45724277,2	MCF-7	breast:
4	chr21:45722493..45724362-chr21:45846453..45848482,2	K562	blood:
5	chr21:45551834..45580791-chr21:45711953..45732193,97	MCF-7	breast:
6	chr21:45720740..45724060-chr21:45730996..45734496,4	MCF-7	breast:
7	chr21:45719852..45723806-chr21:45756512..45759776,5	MCF-7	breast:
8	chr21:45692048..45693952-chr21:45722108..45724674,2	K562	blood:
9	chr21:45556726..45571792-chr21:45714286..45731454,46	K562	blood:

Variant related genes	Relation type
PFKL	TF binding region
ENSG00000160221	Chromatin interaction
ENSG00000241945	Chromatin interaction
ENSG00000160223	Chromatin interaction
ENSG00000225331	Chromatin interaction
ENSG00000160226	Chromatin interaction
ENSG00000160218	Chromatin interaction
ENSG00000232969	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs2070567	0.85[ASN][1000 genomes]
rs2236670	0.94[ASN][1000 genomes]
rs2276249	0.82[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs2838547	0.82[CHB][hapmap];0.93[CHD][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs3746965	0.83[ASN][1000 genomes]
rs59152409	0.96[ASN][1000 genomes]
rs61138219	0.80[ASN][1000 genomes]
rs62220383	0.85[ASN][1000 genomes]
rs62220384	0.85[ASN][1000 genomes]
rs62220386	0.82[ASN][1000 genomes]
rs62220388	0.83[ASN][1000 genomes]
rs8127589	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8133730	0.82[CHB][hapmap];0.93[CHD][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:52 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33817	chr21:45169412-46031810	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	121 gene(s)	inside rSNPs	diseases
2	nsv1064420	chr21:45460089-45814986	Enhancers Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	nsv544472	chr21:45460089-45814986	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
4	nsv432155	chr21:45479055-45772388	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
5	esv1825445	chr21:45535566-45754936	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
6	esv1817474	chr21:45540607-45773102	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
7	nsv533679	chr21:45551026-45768578	Enhancers Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	64 gene(s)	inside rSNPs	diseases
8	nsv913898	chr21:45555079-45941566	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	74 gene(s)	inside rSNPs	diseases
9	nsv428042	chr21:45560437-45848190	Enhancers Active TSS Genic enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	61 gene(s)	inside rSNPs	diseases
10	nsv459295	chr21:45629565-45849864	Genic enhancers Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
11	nsv587740	chr21:45629565-45849864	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
12	nsv913906	chr21:45657970-45818609	Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
13	nsv531555	chr21:45665972-45757659	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
14	nsv913907	chr21:45668171-45740823	Bivalent/Poised TSS Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
15	esv3361489	chr21:45669073-46013747	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	69 gene(s)	inside rSNPs	diseases
16	nsv913910	chr21:45681153-45787250	Bivalent Enhancer Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
17	nsv913911	chr21:45681153-45893907	Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
18	nsv913912	chr21:45687581-45768598	Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
19	nsv913913	chr21:45687581-45787250	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
20	nsv913914	chr21:45688215-45750346	Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
21	nsv913916	chr21:45697755-45752176	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
22	nsv913917	chr21:45697755-45787250	Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
23	nsv913918	chr21:45697755-45941566	Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	60 gene(s)	inside rSNPs	diseases
24	nsv913919	chr21:45699404-45752176	Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
25	nsv913920	chr21:45699404-45824792	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
26	nsv913921	chr21:45699404-45854431	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
27	nsv913922	chr21:45699404-45893907	Genic enhancers Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
28	esv1850701	chr21:45700641-45724055	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
29	nsv913923	chr21:45700641-45726790	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
30	nsv913924	chr21:45700641-45740823	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
31	nsv913925	chr21:45700641-45752176	Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
32	nsv913926	chr21:45700641-45764397	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
33	nsv913927	chr21:45700641-45787250	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
34	nsv913928	chr21:45700641-45811343	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
35	nsv913929	chr21:45700641-45860912	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
36	nsv913930	chr21:45700641-45893907	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
37	nsv587774	chr21:45703660-45726790	Active TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
38	nsv913931	chr21:45703660-45764397	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
39	nsv913932	chr21:45703660-45787250	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
40	nsv913933	chr21:45703660-45811343	ZNF genes & repeats Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
41	nsv913934	chr21:45704644-45739965	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
42	esv1851447	chr21:45705239-45723628	Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
43	nsv913935	chr21:45709153-45787250	Bivalent/Poised TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
44	nsv913936	chr21:45709153-45811343	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
45	nsv913937	chr21:45709153-45865167	Genic enhancers Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
46	nsv913938	chr21:45712588-45787250	Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
47	nsv913939	chr21:45712588-45818609	Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
48	nsv913940	chr21:45712588-45893907	Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
49	esv1838156	chr21:45719977-45726790	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	27 gene(s)	inside rSNPs	diseases
50	nsv587779	chr21:45720360-45750346	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4350841	UBASH3A	cis	parietal	SCAN
rs4350841	DNMT3L	cis	parietal	SCAN

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:45720600-45724800	Enhancers	Fetal Heart	heart
2	chr21:45720800-45731000	Weak transcription	Aorta	Aorta
3	chr21:45721000-45725000	Enhancers	Primary T helper naive cells from peripheral blood	blood
4	chr21:45721000-45725000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr21:45721000-45725600	Enhancers	Liver	Liver
6	chr21:45721000-45725600	Enhancers	Left Ventricle	heart
7	chr21:45721000-45726200	Enhancers	Pancreas	Pancrea
8	chr21:45721000-45727000	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr21:45721000-45757600	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr21:45721200-45724200	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr21:45721200-45724400	Enhancers	Primary B cells from cord blood	blood
12	chr21:45721200-45724600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr21:45721200-45725000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr21:45721200-45726200	Enhancers	Gastric	stomach
15	chr21:45721200-45726400	Enhancers	Stomach Mucosa	stomach
16	chr21:45721200-45727200	Weak transcription	NHDF-Ad	bronchial
17	chr21:45721200-45730800	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr21:45721200-45730800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr21:45721200-45731000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr21:45721200-45731000	Weak transcription	Fetal Kidney	kidney
21	chr21:45721200-45731000	Weak transcription	Osteobl	bone
22	chr21:45721200-45733600	Weak transcription	NH-A	brain
23	chr21:45721400-45724000	Enhancers	Primary T cells fromperipheralblood	blood
24	chr21:45721400-45724000	Enhancers	Brain Cingulate Gyrus	brain
25	chr21:45721400-45724200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr21:45721400-45724200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr21:45721400-45724400	Enhancers	Brain Substantia Nigra	brain
28	chr21:45721400-45724600	Enhancers	Brain Anterior Caudate	brain
29	chr21:45721400-45724800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr21:45721400-45724800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
31	chr21:45721400-45725000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr21:45721400-45725200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
33	chr21:45721400-45725400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr21:45721400-45725400	Enhancers	Primary T helper cells PMA-I stimulated	--
35	chr21:45721400-45726000	Weak transcription	NHLF	lung
36	chr21:45721400-45726200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr21:45721400-45726400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr21:45721400-45726400	Enhancers	Skeletal Muscle Male	skeletal muscle
39	chr21:45721400-45727600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr21:45721400-45728200	Enhancers	Breast Myoepithelial Primary Cells	Breast
41	chr21:45721400-45729000	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr21:45721600-45723800	Enhancers	HMEC	breast
43	chr21:45721600-45725000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr21:45721600-45725000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr21:45721600-45725400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
46	chr21:45721600-45725600	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
47	chr21:45721600-45726200	Enhancers	Adipose Nuclei	Adipose
48	chr21:45721600-45736200	Weak transcription	HSMMtube	muscle
49	chr21:45721800-45724200	Enhancers	Primary T cells from cord blood	blood
50	chr21:45721800-45724200	Weak transcription	Colon Smooth Muscle	Colon

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