Variant report

Variant	rs435259
Chromosome Location	chr19:36348458-36348459
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:36341339..36343391-chr19:36346097..36348874,2	MCF-7	breast:
2	chr19:36348444..36350564-chr19:36358604..36360896,2	K562	blood:
3	chr19:36301268..36304054-chr19:36346309..36349120,2	K562	blood:

Variant related genes	Relation type
ENSG00000105290	Chromatin interaction
ENSG00000250799	Chromatin interaction
ENSG00000161270	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs2073901	0.89[ASN][1000 genomes]
rs370644	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs393116	0.90[ASN][1000 genomes]
rs404299	0.90[ASN][1000 genomes]
rs435605	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs442219	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs446014	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs451846	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60092221	0.90[AMR][1000 genomes]
rs619833	0.90[ASN][1000 genomes]
rs670091	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7253616	0.90[AMR][1000 genomes]
rs807659	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8106827	0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432045	chr19:35556260-36520760	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv911638	chr19:36265508-36537959	Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	esv3526489	chr19:36306483-36741945	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
4	esv3526490	chr19:36306483-36741945	Genic enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
5	esv1831737	chr19:36324324-36690874	Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
6	esv3397651	chr19:36326933-36377725	Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
7	nsv833812	chr19:36331913-36507594	Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
8	nsv833813	chr19:36341181-36499431	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
9	nsv911639	chr19:36342909-36365985	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:36346200-36348600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr19:36346800-36348600	Active TSS	H9 Cell Line	embryonic stem cell
3	chr19:36346800-36348600	Active TSS	Pancreatic Islets	Pancreatic Islet
4	chr19:36347000-36348600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
5	chr19:36347000-36348600	Bivalent/Poised TSS	Fetal Brain Female	brain
6	chr19:36347200-36348600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr19:36347200-36348600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
8	chr19:36347600-36348600	Bivalent/Poised TSS	Primary T killer memory cells from peripheral blood	blood
9	chr19:36347800-36348600	Flanking Active TSS	Dnd41	blood
10	chr19:36348000-36348600	Bivalent Enhancer	Primary B cells from peripheral blood	blood
11	chr19:36348000-36348600	Flanking Active TSS	Brain Germinal Matrix	brain
12	chr19:36348000-36349000	Active TSS	Pancreas	Pancrea
13	chr19:36348200-36348600	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
14	chr19:36348200-36348600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
15	chr19:36348200-36348600	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr19:36348200-36348600	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
17	chr19:36348200-36351400	Weak transcription	Gastric	stomach
18	chr19:36348400-36348600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr19:36348400-36348600	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr19:36348400-36348600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr19:36348400-36348600	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
22	chr19:36348400-36348600	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
23	chr19:36348400-36348600	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
24	chr19:36348400-36348600	Bivalent Enhancer	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr19:36348400-36348600	Bivalent Enhancer	Brain Hippocampus Middle	brain
26	chr19:36348400-36348600	Bivalent/Poised TSS	Colonic Mucosa	Colon
27	chr19:36348400-36348600	Bivalent Enhancer	Fetal Stomach	stomach

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