Variant report

Variant	rs4353576
Chromosome Location	chr19:19351656-19351657
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10406347	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];1.00[LWK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10417312	1.00[EUR][1000 genomes]
rs10417318	0.82[JPT][hapmap]
rs10426537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13344556	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16996008	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1859056	1.00[GIH][hapmap];0.85[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs28475118	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3761082	0.82[JPT][hapmap]
rs4808916	0.85[JPT][hapmap]
rs4808925	0.82[JPT][hapmap]
rs7250310	0.82[ASW][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8100866	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv911303	chr19:19256870-19505087	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv911304	chr19:19303802-19408164	Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Genic enhancers Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv911305	chr19:19303802-19663850	Genic enhancers Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
4	esv3498920	chr19:19349786-19351956	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
5	esv3498921	chr19:19349786-19351956	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:19345800-19359200	Weak transcription	Brain Cingulate Gyrus	brain
2	chr19:19345800-19359600	Strong transcription	Cortex derived primary cultured neurospheres	brain
3	chr19:19345800-19360400	Weak transcription	Brain Angular Gyrus	brain
4	chr19:19346000-19352200	Weak transcription	Brain Substantia Nigra	brain
5	chr19:19346000-19353000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr19:19346000-19359400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr19:19346000-19363200	Strong transcription	Fetal Brain Female	brain
8	chr19:19346000-19367000	Weak transcription	Brain Anterior Caudate	brain
9	chr19:19347200-19353800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr19:19347400-19353800	Strong transcription	Brain Germinal Matrix	brain
11	chr19:19347400-19367200	Weak transcription	Fetal Brain Male	brain
12	chr19:19351000-19352000	Strong transcription	Brain Inferior Temporal Lobe	brain
13	chr19:19351200-19352400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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