Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:147511830..147514610-chr5:147516441..147519250,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10038991	0.86[ASN][1000 genomes]
rs10065129	0.81[ASN][1000 genomes]
rs10069697	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1422993	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1422995	0.81[ASN][1000 genomes]
rs1422996	0.81[ASN][1000 genomes]
rs1862439	0.86[ASN][1000 genomes]
rs1862445	0.86[ASN][1000 genomes]
rs1862446	0.86[ASN][1000 genomes]
rs3777140	0.86[ASN][1000 genomes]
rs3777143	0.86[ASN][1000 genomes]
rs3815735	0.82[ASN][1000 genomes]
rs3815737	0.86[ASN][1000 genomes]
rs4357026	0.81[ASN][1000 genomes]
rs4610447	0.81[ASN][1000 genomes]
rs57930479	0.86[ASN][1000 genomes]
rs62388364	0.86[ASN][1000 genomes]
rs6580517	0.81[ASN][1000 genomes]
rs6864115	0.83[EUR][1000 genomes]
rs6872218	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6872326	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6886271	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6891892	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6895078	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6896914	0.86[ASN][1000 genomes]
rs7728739	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9325073	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9325074	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9325075	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs988885	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883015	chr5:147404281-147751035	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv830515	chr5:147460852-147602247	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147487800-147525800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:147502400-147526000	Weak transcription	Hela-S3	cervix
3	chr5:147507400-147521000	Weak transcription	Esophagus	oesophagus
4	chr5:147513600-147522200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr5:147513600-147526200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr5:147515200-147525400	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr5:147515400-147520800	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr5:147515400-147524400	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr5:147515600-147520800	Weak transcription	Stomach Mucosa	stomach
10	chr5:147515800-147525200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr5:147517200-147525400	Weak transcription	HUES64 Cell Line	embryonic stem cell

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