Variant report

Variant	rs4355108
Chromosome Location	chr2:151487613-151487614
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:151341609..151343494-chr2:151486299..151487887,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000115963	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10930186	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10930199	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11678115	0.83[EUR][1000 genomes]
rs11883782	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11894221	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13018941	0.86[EUR][1000 genomes]
rs13020496	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13031659	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13413391	0.81[AMR][1000 genomes]
rs13419254	0.81[AMR][1000 genomes]
rs2290813	0.81[AMR][1000 genomes]
rs2290814	0.81[AMR][1000 genomes]
rs2340857	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs2341070	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2341077	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2341080	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2341093	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4260239	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4438475	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs4627563	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4638794	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6720091	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs707021	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs751614	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7589990	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7591161	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7603668	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7604619	0.82[CHB][hapmap];0.81[ASN][1000 genomes]
rs9287863	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001838	chr2:150819672-151745876	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv535980	chr2:150819672-151745876	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv532473	chr2:151164210-151701860	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	nsv834415	chr2:151374254-151558649	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	esv2757836	chr2:151457277-151844210	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	esv2759096	chr2:151457277-151844210	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:151484800-151487800	Weak transcription	Osteobl	bone
2	chr2:151486800-151488000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr2:151486800-151488400	Enhancers	Brain Cingulate Gyrus	brain
4	chr2:151486800-151488600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr2:151486800-151488800	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr2:151487000-151487800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr2:151487000-151487800	Enhancers	Liver	Liver
8	chr2:151487000-151487800	Enhancers	Brain Angular Gyrus	brain
9	chr2:151487000-151487800	Enhancers	Brain Anterior Caudate	brain
10	chr2:151487000-151487800	Enhancers	Brain Hippocampus Middle	brain
11	chr2:151487000-151488000	Enhancers	Fetal Intestine Small	intestine
12	chr2:151487000-151488600	Enhancers	HSMM	muscle
13	chr2:151487000-151488800	Enhancers	Fetal Muscle Leg	muscle
14	chr2:151487000-151488800	Enhancers	NHDF-Ad	bronchial
15	chr2:151487000-151489000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr2:151487000-151489000	Enhancers	HSMMtube	muscle
17	chr2:151487200-151487800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr2:151487200-151487800	Enhancers	Fetal Kidney	kidney
19	chr2:151487200-151487800	Enhancers	NH-A	brain
20	chr2:151487200-151487800	Enhancers	NHLF	lung
21	chr2:151487200-151488200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr2:151487200-151488200	Enhancers	Muscle Satellite Cultured Cells	--
23	chr2:151487200-151488600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr2:151487400-151487800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr2:151487400-151487800	Enhancers	Fetal Intestine Large	intestine
26	chr2:151487400-151489400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr2:151487400-151494400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links