Variant report

Variant	rs4355803
Chromosome Location	chr8:118834952-118834953
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11990095	0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.91[ASN][1000 genomes]
rs13264956	0.92[EUR][1000 genomes]
rs13271710	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13271840	0.91[ASN][1000 genomes]
rs17430259	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17452694	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4270997	0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4876757	0.96[CEU][hapmap];0.89[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9642837	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019636	chr8:118598433-118946091	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv539734	chr8:118598433-118946091	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv831439	chr8:118747352-118899118	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv933516	chr8:118764605-119009093	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:118801000-118843600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr8:118804200-118836000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr8:118804200-118838000	Strong transcription	HSMM	muscle
4	chr8:118805400-118836800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr8:118805600-118849800	Strong transcription	Liver	Liver
6	chr8:118808600-118849400	Weak transcription	Stomach Mucosa	stomach
7	chr8:118810000-118843800	Weak transcription	Fetal Heart	heart
8	chr8:118814000-118842200	Weak transcription	Primary B cells from cord blood	blood
9	chr8:118816800-118836800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
10	chr8:118817200-118852400	Weak transcription	Psoas Muscle	Psoas
11	chr8:118817200-118852400	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr8:118817400-118835800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr8:118819000-118842000	Weak transcription	Fetal Kidney	kidney
14	chr8:118819600-118851000	Weak transcription	Fetal Thymus	thymus
15	chr8:118822800-118835000	Strong transcription	Duodenum Mucosa	Duodenum
16	chr8:118822800-118835600	Strong transcription	Primary T cells from cord blood	blood
17	chr8:118824200-118835200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr8:118824600-118835400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr8:118825000-118844800	Weak transcription	Brain Germinal Matrix	brain
20	chr8:118825000-118850000	Weak transcription	Fetal Brain Female	brain
21	chr8:118825200-118841000	Weak transcription	Thymus	Thymus
22	chr8:118825200-118848000	Weak transcription	Colonic Mucosa	Colon
23	chr8:118825200-118859600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr8:118825200-118859800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr8:118825400-118849200	Weak transcription	Brain Hippocampus Middle	brain
26	chr8:118825400-118849600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr8:118825400-118852400	Weak transcription	Right Ventricle	heart
28	chr8:118825400-118853200	Weak transcription	Brain Anterior Caudate	brain
29	chr8:118825400-118859000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr8:118825600-118843800	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr8:118825600-118849600	Weak transcription	Brain Cingulate Gyrus	brain
32	chr8:118825600-118849800	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr8:118825600-118857200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr8:118825600-118860000	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr8:118825800-118846400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr8:118825800-118850400	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr8:118827200-118847200	Weak transcription	Primary T cells fromperipheralblood	blood
38	chr8:118827200-118855000	Weak transcription	Right Atrium	heart
39	chr8:118827600-118838000	Weak transcription	Hela-S3	cervix
40	chr8:118827600-118841200	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr8:118827800-118841000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr8:118827800-118844000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr8:118828000-118837800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr8:118828200-118835000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr8:118828600-118835200	Strong transcription	Sigmoid Colon	Sigmoid Colon
46	chr8:118828600-118835600	Strong transcription	HMEC	breast
47	chr8:118828600-118857000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr8:118828800-118835600	Strong transcription	Rectal Mucosa Donor 29	rectum
49	chr8:118828800-118841000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr8:118829000-118835400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links