Variant report

Variant	rs4355846
Chromosome Location	chr9:116012248-116012249
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:116011649..116014033-chr9:116026530..116028582,2	K562	blood:
2	chr9:116001272..116004183-chr9:116010675..116013051,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10981711	0.83[AFR][1000 genomes]
rs10981714	0.83[AFR][1000 genomes]
rs12686377	0.97[ASN][1000 genomes]
rs16930959	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16931182	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16932083	0.83[AFR][1000 genomes]
rs2233914	0.95[ASN][1000 genomes]
rs28706447	1.00[ASN][1000 genomes]
rs3810915	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41280227	1.00[ASN][1000 genomes]
rs4641140	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58039219	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58930207	0.95[ASN][1000 genomes]
rs59987461	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7022516	1.00[ASN][1000 genomes]
rs7046035	0.93[ASN][1000 genomes]
rs7850029	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530949	chr9:115821128-116487796	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv1042663	chr9:115920158-116167140	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv893744	chr9:115934852-116170227	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv893746	chr9:115983540-116022826	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:115985000-116020800	Weak transcription	Aorta	Aorta
2	chr9:115985600-116020800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr9:115985800-116018400	Weak transcription	NHEK	skin
4	chr9:115985800-116019000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr9:115985800-116021000	Weak transcription	Fetal Stomach	stomach
6	chr9:115986400-116013000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr9:115987600-116017800	Weak transcription	Fetal Muscle Trunk	muscle
8	chr9:115987600-116018200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr9:115987800-116021000	Weak transcription	Hela-S3	cervix
10	chr9:115989000-116019200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr9:115995200-116017800	Weak transcription	Left Ventricle	heart
12	chr9:115995400-116018000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr9:115996000-116022200	Weak transcription	Primary B cells from peripheral blood	blood
14	chr9:115996000-116031600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr9:115996200-116018600	Weak transcription	Primary T cells from cord blood	blood
16	chr9:115996200-116022400	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr9:115996600-116019200	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr9:115998400-116018200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr9:115998600-116013000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr9:116000000-116017400	Weak transcription	HepG2	liver
21	chr9:116002000-116018400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr9:116002200-116018400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr9:116004400-116020400	Weak transcription	Fetal Thymus	thymus
24	chr9:116004800-116013000	Weak transcription	Liver	Liver
25	chr9:116005200-116017600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr9:116006000-116018000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr9:116006000-116018400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr9:116006200-116020400	Weak transcription	Psoas Muscle	Psoas
29	chr9:116007200-116019200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr9:116007200-116019400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr9:116007200-116020800	Weak transcription	Ovary	ovary
32	chr9:116008200-116037000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr9:116009600-116013000	Weak transcription	Monocytes-CD14+_RO01746	blood
34	chr9:116009600-116019000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr9:116009600-116020200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr9:116009600-116029800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr9:116009800-116013000	Weak transcription	Primary monocytes fromperipheralblood	blood
38	chr9:116010000-116018000	Weak transcription	K562	blood
39	chr9:116010000-116020000	Weak transcription	GM12878-XiMat	blood
40	chr9:116010200-116031800	Weak transcription	Fetal Heart	heart
41	chr9:116011400-116017800	Weak transcription	Duodenum Mucosa	Duodenum
42	chr9:116011400-116020200	Weak transcription	A549	lung
43	chr9:116011400-116028800	Weak transcription	Fetal Kidney	kidney
44	chr9:116011600-116018400	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr9:116011600-116020600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr9:116011600-116021000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr9:116012000-116013000	Weak transcription	Fetal Intestine Small	intestine
48	chr9:116012000-116018600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr9:116012200-116017800	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr9:116012200-116019400	Weak transcription	HUES64 Cell Line	embryonic stem cell

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