Variant report

Variant	rs4356777
Chromosome Location	chr3:28631155-28631156
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11712489	0.82[CEU][hapmap]
rs4133027	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4234338	0.84[CEU][hapmap];0.81[CHB][hapmap];0.86[ASN][1000 genomes]
rs4234339	0.81[CHB][hapmap];0.86[ASN][1000 genomes]
rs4234340	0.86[ASN][1000 genomes]
rs4234341	0.89[CEU][hapmap];0.81[CHB][hapmap];0.86[ASN][1000 genomes]
rs4368456	0.89[CEU][hapmap];0.85[ASN][1000 genomes]
rs4478040	0.88[ASN][1000 genomes]
rs4521182	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4522734	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4610188	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6549860	0.88[ASN][1000 genomes]
rs6549861	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6789363	0.88[ASN][1000 genomes]
rs6796390	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7619927	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7642049	0.88[ASN][1000 genomes]
rs9815067	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3328565	chr3:27991169-28915035	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv876649	chr3:28126595-28718454	Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv1015015	chr3:28461972-28728494	Bivalent/Poised TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv916364	chr3:28468275-29146280	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv590010	chr3:28469830-28727214	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv524090	chr3:28631124-28645278	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:28618200-28631200	Weak transcription	Psoas Muscle	Psoas
2	chr3:28627600-28631600	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr3:28627800-28631600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr3:28627800-28631800	Weak transcription	Brain Anterior Caudate	brain
5	chr3:28628400-28631800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:28628600-28631800	Weak transcription	Aorta	Aorta
7	chr3:28628800-28633600	Weak transcription	Brain Substantia Nigra	brain
8	chr3:28629400-28631200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr3:28631000-28632400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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