Variant report

Variant	rs4360519
Chromosome Location	chr1:159399768-159399769
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10908720	0.81[TSI][hapmap]
rs11265194	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12048482	0.94[ASW][hapmap];0.95[LWK][hapmap];0.99[MKK][hapmap];0.81[TSI][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes]
rs12145079	0.81[TSI][hapmap]
rs12402605	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4656235	0.86[AFR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4360519	SHE	cis	cerebellum	SCAN
rs4360519	C1orf189	cis	cerebellum	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159398400-159399800	Enhancers	HMEC	breast
2	chr1:159398400-159400200	Enhancers	Muscle Satellite Cultured Cells	--
3	chr1:159398400-159400200	Enhancers	NH-A	brain
4	chr1:159398400-159400200	Enhancers	Osteobl	bone
5	chr1:159398400-159400400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr1:159398600-159399800	Enhancers	HSMM	muscle
7	chr1:159398600-159400000	Enhancers	Fetal Intestine Large	intestine
8	chr1:159398600-159400000	Enhancers	Fetal Intestine Small	intestine
9	chr1:159398800-159400000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr1:159399400-159399800	Enhancers	Placenta	Placenta
11	chr1:159399400-159400800	Weak transcription	Duodenum Mucosa	Duodenum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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