Variant report

Variant	rs4362328
Chromosome Location	chr14:69071727-69071728
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69067505..69070348-chr14:69070905..69074097,3	K562	blood:
2	chr14:69071037..69077466-chr14:69256300..69263431,10	MCF-7	breast:
3	chr14:69064012..69066620-chr14:69071141..69073837,2	MCF-7	breast:
4	chr14:69063634..69066048-chr14:69070455..69072811,2	K562	blood:
5	chr14:69070456..69072481-chr14:69073546..69076454,2	K562	blood:
6	chr14:69068555..69070348-chr14:69070905..69073728,2	K562	blood:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2236185	0.80[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1795754	chr14:69017623-69079110	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv1832715	chr14:69017623-69079110	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv902069	chr14:69068384-69077457	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv516614	chr14:69069594-69077457	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4362328	ZFYVE26	cis	parietal	SCAN
rs4362328	PLEKHG3	cis	cerebellum	SCAN

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69061200-69078000	Weak transcription	Fetal Heart	heart
2	chr14:69062200-69073800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr14:69066000-69073800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr14:69066400-69072600	Weak transcription	Stomach Smooth Muscle	stomach
5	chr14:69066400-69073800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr14:69066800-69072200	Weak transcription	Brain Substantia Nigra	brain
7	chr14:69066800-69072200	Weak transcription	Colon Smooth Muscle	Colon
8	chr14:69067000-69072800	Weak transcription	Brain Cingulate Gyrus	brain
9	chr14:69067000-69074000	Weak transcription	Spleen	Spleen
10	chr14:69067200-69072400	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr14:69067200-69072600	Weak transcription	Colonic Mucosa	Colon
12	chr14:69067200-69072600	Weak transcription	Left Ventricle	heart
13	chr14:69067200-69072800	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr14:69067200-69072800	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr14:69067200-69073000	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr14:69067200-69073400	Weak transcription	Fetal Lung	lung
17	chr14:69067200-69073400	Weak transcription	Right Ventricle	heart
18	chr14:69067200-69073400	Weak transcription	Stomach Mucosa	stomach
19	chr14:69067200-69073800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr14:69067200-69074000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr14:69067400-69073800	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr14:69067600-69073000	Weak transcription	Right Atrium	heart
23	chr14:69067600-69074400	Weak transcription	Small Intestine	intestine
24	chr14:69067800-69073400	Weak transcription	Fetal Brain Female	brain
25	chr14:69068200-69073600	Weak transcription	Brain Hippocampus Middle	brain
26	chr14:69068200-69073800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr14:69068800-69073600	Weak transcription	Duodenum Mucosa	Duodenum
28	chr14:69069000-69072600	Weak transcription	Pancreas	Pancrea
29	chr14:69069200-69072400	Weak transcription	Gastric	stomach
30	chr14:69069600-69080000	Enhancers	Fetal Muscle Leg	muscle
31	chr14:69069800-69071800	Enhancers	HepG2	liver
32	chr14:69070400-69072000	Weak transcription	Monocytes-CD14+_RO01746	blood
33	chr14:69070400-69077400	Enhancers	Fetal Muscle Trunk	muscle
34	chr14:69070600-69074000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr14:69070800-69073000	Weak transcription	Fetal Kidney	kidney
36	chr14:69070800-69073800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr14:69071000-69071800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr14:69071000-69073000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr14:69071000-69073800	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr14:69071000-69073800	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr14:69071200-69072400	ZNF genes & repeats	Fetal Stomach	stomach
42	chr14:69071200-69072600	ZNF genes & repeats	Fetal Intestine Small	intestine
43	chr14:69071200-69072800	Weak transcription	Adipose Nuclei	Adipose
44	chr14:69071600-69073800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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