Variant report

Variant	rs4368461
Chromosome Location	chr3:139832777-139832778
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12486848	0.84[CEU][hapmap];0.82[CHB][hapmap];0.80[EUR][1000 genomes]
rs12630269	0.95[CEU][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16849828	0.84[CEU][hapmap];0.82[CHB][hapmap];0.85[GIH][hapmap];0.91[TSI][hapmap];0.80[EUR][1000 genomes]
rs16849851	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1878978	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1878979	0.95[CEU][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1878984	0.82[CHB][hapmap]
rs2350487	0.82[CHB][hapmap]
rs2882426	0.82[CHB][hapmap]
rs2882428	0.84[CEU][hapmap];0.87[CHB][hapmap];0.84[CHD][hapmap];0.81[GIH][hapmap];0.82[JPT][hapmap];0.89[TSI][hapmap];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4683797	0.95[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6439893	0.82[CHB][hapmap]
rs6772844	0.81[CHB][hapmap]
rs7652623	0.91[CHB][hapmap];0.87[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998423	chr3:139526446-139947336	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv829738	chr3:139670836-139851945	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv829739	chr3:139797496-140002685	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:139822400-139834600	Weak transcription	HSMMtube	muscle
2	chr3:139828400-139835600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:139830200-139847400	Weak transcription	Right Atrium	heart
4	chr3:139831400-139837400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:139831800-139832800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr3:139832400-139833400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr3:139832600-139834400	Enhancers	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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