Variant report

Variant	rs4369031
Chromosome Location	chr8:121690508-121690509
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs4387018	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4455881	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4532637	0.82[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4870746	0.82[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4871094	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59425705	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59526603	0.89[ASN][1000 genomes]
rs6469946	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6469947	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs66486105	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66559448	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6985322	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6985758	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7004385	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7005038	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs72682538	0.89[ASN][1000 genomes]
rs72682539	0.89[ASN][1000 genomes]
rs72682541	0.86[ASN][1000 genomes]
rs72682542	0.86[ASN][1000 genomes]
rs7814101	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7835099	0.95[EUR][1000 genomes]
rs7841636	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv6369	chr8:121654665-121699920	ZNF genes & repeats Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1016172	chr8:121679590-121929916	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv891422	chr8:121680857-121819478	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121672600-121699600	Weak transcription	HSMM	muscle
2	chr8:121679800-121714600	Weak transcription	Spleen	Spleen
3	chr8:121680600-121697600	Weak transcription	Gastric	stomach
4	chr8:121680600-121704600	Weak transcription	Fetal Intestine Large	intestine
5	chr8:121680800-121701000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr8:121681400-121704200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr8:121681600-121699600	Weak transcription	Osteobl	bone
8	chr8:121681600-121701000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr8:121682200-121700400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr8:121682800-121698000	Weak transcription	Primary B cells from cord blood	blood
11	chr8:121685400-121690600	Weak transcription	Liver	Liver
12	chr8:121685400-121697200	Weak transcription	Lung	lung
13	chr8:121685400-121714400	Weak transcription	Pancreas	Pancrea
14	chr8:121685600-121714200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr8:121686200-121691000	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr8:121686200-121691000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr8:121686200-121697200	Weak transcription	Fetal Muscle Trunk	muscle
18	chr8:121686200-121697600	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr8:121686600-121704400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr8:121686800-121695800	Weak transcription	Primary hematopoietic stem cells	blood
21	chr8:121686800-121696400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr8:121686800-121697200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr8:121686800-121709000	Weak transcription	Small Intestine	intestine
24	chr8:121687000-121690600	Weak transcription	Fetal Muscle Leg	muscle
25	chr8:121687000-121697600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr8:121687000-121704200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr8:121688200-121690600	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr8:121688200-121699600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr8:121688200-121699600	Weak transcription	NHLF	lung
30	chr8:121688200-121701000	Weak transcription	Psoas Muscle	Psoas
31	chr8:121688600-121690600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr8:121689600-121690600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr8:121689800-121691800	Enhancers	Monocytes-CD14+_RO01746	blood
34	chr8:121690000-121690600	Enhancers	Colon Smooth Muscle	Colon
35	chr8:121690000-121690800	Enhancers	Rectal Smooth Muscle	rectum
36	chr8:121690000-121690800	Enhancers	HSMMtube	muscle
37	chr8:121690000-121691400	Enhancers	Primary neutrophils fromperipheralblood	blood
38	chr8:121690000-121691600	Enhancers	Primary monocytes fromperipheralblood	blood
39	chr8:121690200-121690600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr8:121690200-121690800	Enhancers	Fetal Stomach	stomach
41	chr8:121690200-121691200	Enhancers	Primary hematopoietic stem cells short term culture	blood
42	chr8:121690200-121706600	Strong transcription	HepG2	liver
43	chr8:121690400-121690600	Enhancers	Fetal Kidney	kidney
44	chr8:121690400-121690800	Enhancers	Primary T cells from cord blood	blood
45	chr8:121690400-121690800	Enhancers	Adipose Nuclei	Adipose
46	chr8:121690400-121691000	Enhancers	Cortex derived primary cultured neurospheres	brain
47	chr8:121690400-121691200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr8:121690400-121691400	Enhancers	Skeletal Muscle Female	skeletal muscle

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