Variant report

Variant	rs4370341
Chromosome Location	chr6:165362610-165362611
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10806815	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2146030	0.84[AMR][1000 genomes]
rs2181105	0.81[AMR][1000 genomes]
rs35765053	0.82[AMR][1000 genomes]
rs4385289	0.89[AMR][1000 genomes]
rs4416652	0.87[AMR][1000 genomes]
rs6903589	0.81[AMR][1000 genomes]
rs6906353	0.84[AMR][1000 genomes]
rs6914484	0.89[AMR][1000 genomes]
rs6918429	0.81[AMR][1000 genomes]
rs6919069	0.87[AMR][1000 genomes]
rs6919495	0.84[AMR][1000 genomes]
rs6920410	0.84[AMR][1000 genomes]
rs6929301	0.84[AMR][1000 genomes]
rs6935467	0.89[AMR][1000 genomes]
rs716143	0.84[AMR][1000 genomes]
rs9347043	0.81[AMR][1000 genomes]
rs9347046	0.90[AMR][1000 genomes]
rs9347945	0.84[AMR][1000 genomes]
rs9347947	0.88[AMR][1000 genomes]
rs9347948	0.88[AMR][1000 genomes]
rs9347949	0.88[AMR][1000 genomes]
rs9356307	0.88[AMR][1000 genomes]
rs9356309	0.88[AMR][1000 genomes]
rs9364776	0.81[AMR][1000 genomes]
rs9364779	0.86[AMR][1000 genomes]
rs9365819	0.84[AMR][1000 genomes]
rs9365820	0.84[AMR][1000 genomes]
rs9365827	0.88[AMR][1000 genomes]
rs9365839	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv605232	chr6:164994771-165401154	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv886925	chr6:165319631-165705488	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv886926	chr6:165358270-165478051	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:165361000-165364600	Weak transcription	HSMMtube	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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