Variant report

Variant	rs4373841
Chromosome Location	chr10:49862652-49862653
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFYB	chr10:49862418-49862725	K562	blood:	n/a	n/a
2	POLR2A	chr10:49862250-49862784	U87	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:49714827..49719872-chr10:49861427..49864767,4	K562	blood:

Variant related genes	Relation type
ARHGAP22	TF binding region
ENSG00000248682	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10857616	0.88[ASN][1000 genomes]
rs11101416	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12257645	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2377595	0.91[ASN][1000 genomes]
rs2377596	0.90[ASN][1000 genomes]
rs2377612	0.96[ASN][1000 genomes]
rs2377613	0.96[ASN][1000 genomes]
rs2377614	0.96[ASN][1000 genomes]
rs2377615	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2377616	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2377618	0.87[EUR][1000 genomes]
rs4240515	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4375365	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4525142	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4562728	0.93[ASN][1000 genomes]
rs7087882	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7087885	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7911516	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49844000-49863400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:49850600-49863400	Weak transcription	Pancreas	Pancrea
3	chr10:49853000-49863400	Weak transcription	Right Atrium	heart
4	chr10:49853800-49863400	Weak transcription	Aorta	Aorta
5	chr10:49854200-49863400	Weak transcription	Brain Angular Gyrus	brain
6	chr10:49856200-49863200	Weak transcription	Spleen	Spleen
7	chr10:49859200-49863400	Enhancers	Brain Substantia Nigra	brain
8	chr10:49859400-49863000	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr10:49860200-49863200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr10:49860400-49863200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr10:49860400-49863400	Weak transcription	HSMMtube	muscle
12	chr10:49860600-49863400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr10:49861200-49862800	Enhancers	Brain Cingulate Gyrus	brain
14	chr10:49861600-49863400	Enhancers	NHDF-Ad	bronchial
15	chr10:49861800-49863400	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr10:49861800-49863400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr10:49862400-49862800	Flanking Active TSS	HSMM	muscle
18	chr10:49862400-49862800	Flanking Active TSS	Osteobl	bone
19	chr10:49862400-49863200	Enhancers	HUVEC	blood vessel
20	chr10:49862400-49863200	Enhancers	NH-A	brain
21	chr10:49862400-49863400	Enhancers	Brain Anterior Caudate	brain
22	chr10:49862400-49864600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr10:49862600-49862800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr10:49862600-49862800	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
25	chr10:49862600-49862800	Enhancers	NHLF	lung
26	chr10:49862600-49863200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr10:49862600-49863200	Weak transcription	Brain Hippocampus Middle	brain
28	chr10:49862600-49863200	Weak transcription	Right Ventricle	heart
29	chr10:49862600-49863400	Enhancers	Primary monocytes fromperipheralblood	blood
30	chr10:49862600-49863400	Enhancers	Muscle Satellite Cultured Cells	--
31	chr10:49862600-49863400	Enhancers	Adipose Nuclei	Adipose
32	chr10:49862600-49863400	Weak transcription	Colonic Mucosa	Colon
33	chr10:49862600-49863400	Weak transcription	Lung	lung
34	chr10:49862600-49863400	Weak transcription	HMEC	breast

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