Variant report

Variant	rs4376054
Chromosome Location	chr3:68032600-68032601
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10510968	1.00[ASN][1000 genomes]
rs1349006	0.84[ASN][1000 genomes]
rs1385522	0.82[ASN][1000 genomes]
rs1447743	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1447749	0.82[AMR][1000 genomes]
rs1447753	0.82[AMR][1000 genomes]
rs1447761	0.84[ASN][1000 genomes]
rs1447771	0.82[AMR][1000 genomes]
rs17140740	0.82[AMR][1000 genomes]
rs17140869	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1839042	0.83[ASN][1000 genomes]
rs1872433	0.82[ASN][1000 genomes]
rs1905800	0.84[ASN][1000 genomes]
rs2361371	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2885251	0.82[AMR][1000 genomes]
rs34597575	0.82[AMR][1000 genomes]
rs35040857	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs35976744	0.82[ASN][1000 genomes]
rs36112959	0.82[AMR][1000 genomes]
rs4103349	0.88[ASN][1000 genomes]
rs4603969	0.98[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs4856914	0.82[AMR][1000 genomes]
rs4856916	0.83[ASN][1000 genomes]
rs4856920	0.84[ASN][1000 genomes]
rs4856931	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6548896	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6763163	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6771729	0.84[ASN][1000 genomes]
rs6775637	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6784552	0.83[ASN][1000 genomes]
rs6790710	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6808564	0.88[ASN][1000 genomes]
rs7615755	0.83[ASN][1000 genomes]
rs7630186	0.82[AMR][1000 genomes]
rs7635638	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7639293	0.85[ASN][1000 genomes]
rs7643788	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7649759	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs936779	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002010	chr3:67785913-68312064	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv834720	chr3:67853167-68037201	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1009871	chr3:67862617-68312064	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv536583	chr3:67862617-68312064	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1010231	chr3:67894825-68117879	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1013531	chr3:67917771-68070027	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	esv3442201	chr3:67925312-68064610	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv3338669	chr3:67925912-68064160	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	esv3395568	chr3:67955462-68064660	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv876924	chr3:67978367-68063259	Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68031000-68034000	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr3:68032400-68033000	Enhancers	Brain Germinal Matrix	brain
3	chr3:68032600-68033400	Enhancers	Fetal Brain Female	brain
4	chr3:68032600-68033800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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