Variant report

Variant	rs4377127
Chromosome Location	chr15:78264125-78264126
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10775214	1.00[CEU][hapmap];0.85[GIH][hapmap];0.86[TSI][hapmap]
rs11072726	0.83[GIH][hapmap]
rs12438168	0.84[AMR][1000 genomes]
rs12900731	0.85[GIH][hapmap];0.92[TSI][hapmap]
rs1837912	0.86[GIH][hapmap];0.92[TSI][hapmap]
rs4886998	1.00[CEU][hapmap]
rs7170101	0.86[GIH][hapmap];0.92[TSI][hapmap]
rs7174640	1.00[CEU][hapmap]
rs8027530	1.00[CEU][hapmap]
rs8033216	0.86[GIH][hapmap];0.92[TSI][hapmap]
rs9920180	0.86[GIH][hapmap];0.92[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1806097	chr15:77817889-78301377	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
3	esv1833316	chr15:78081307-78328108	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv904426	chr15:78090630-78264164	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78258800-78275200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr15:78262000-78264200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr15:78262200-78266200	Weak transcription	NHEK	skin
4	chr15:78262800-78264200	Weak transcription	Placenta	Placenta
5	chr15:78262800-78264400	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr15:78263200-78264200	Weak transcription	Left Ventricle	heart
7	chr15:78263400-78264200	Enhancers	Hela-S3	cervix
8	chr15:78263600-78264400	Weak transcription	HSMMtube	muscle
9	chr15:78263800-78264600	Enhancers	Duodenum Mucosa	Duodenum
10	chr15:78264000-78264400	Weak transcription	Fetal Intestine Large	intestine
11	chr15:78264000-78264400	Enhancers	Placenta Amnion	Placenta Amnion
12	chr15:78264000-78264800	Enhancers	Adipose Nuclei	Adipose
13	chr15:78264000-78264800	Enhancers	HSMM	muscle
14	chr15:78264000-78266400	Weak transcription	Fetal Brain Female	brain
15	chr15:78264000-78269200	Enhancers	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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