Variant report

Variant	rs4377158
Chromosome Location	chr16:65257766-65257767
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1946272	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7196205	0.81[ASN][1000 genomes]
rs889447	0.81[AMR][1000 genomes]
rs966098	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9923878	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9934585	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9934740	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9937705	0.86[CHB][hapmap];0.88[CHD][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap];0.82[TSI][hapmap];0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34131	chr16:65137094-65379496	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv431509	chr16:65211408-65302840	Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:65254200-65263000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr16:65256600-65258400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
3	chr16:65256600-65259400	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr16:65256800-65258000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr16:65257200-65258000	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr16:65257400-65258000	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr16:65257400-65259000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr16:65257600-65258000	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr16:65257600-65258600	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr16:65257600-65258600	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr16:65257600-65265200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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