Variant report

Variant	rs4377768
Chromosome Location	chr6:63653344-63653345
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10455103	0.81[EUR][1000 genomes]
rs12529331	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13196154	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13205352	0.96[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13218757	0.81[EUR][1000 genomes]
rs1538086	0.89[AMR][1000 genomes]
rs1539020	0.83[ASN][1000 genomes]
rs1539021	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1577823	0.87[AMR][1000 genomes]
rs1856913	0.81[EUR][1000 genomes]
rs1981257	0.83[ASN][1000 genomes]
rs1981258	0.80[ASN][1000 genomes]
rs1981259	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2050904	0.81[EUR][1000 genomes]
rs2185578	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2226071	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4084782	0.94[AMR][1000 genomes]
rs4235959	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4289625	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4308539	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4312970	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4312971	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4317388	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4320343	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4320344	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4320345	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4320346	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4333395	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4440443	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4470833	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4504456	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4557498	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4579334	0.89[AMR][1000 genomes]
rs4710388	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4710391	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4710392	0.81[EUR][1000 genomes]
rs59775654	0.85[AMR][1000 genomes]
rs6453827	0.85[AMR][1000 genomes]
rs6453938	0.83[ASN][1000 genomes]
rs6907025	0.83[EUR][1000 genomes]
rs6907045	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6933463	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6939766	0.81[EUR][1000 genomes]
rs6940961	0.85[AMR][1000 genomes]
rs7451832	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7739136	0.92[AMR][1000 genomes]
rs7739641	0.87[AMR][1000 genomes]
rs7750310	0.83[ASN][1000 genomes]
rs7773896	0.92[AMR][1000 genomes]
rs9341594	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9343307	0.92[AMR][1000 genomes]
rs9343308	0.92[AMR][1000 genomes]
rs9359136	0.81[AMR][1000 genomes]
rs9360945	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9443262	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9447562	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9447749	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9447750	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029503	chr6:63033365-63698355	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv532026	chr6:63085396-63698477	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv917014	chr6:63085410-63698365	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv885974	chr6:63241352-63672200	ZNF genes & repeats Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1019831	chr6:63279677-64230736	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv885979	chr6:63380661-63753657	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	nsv885982	chr6:63460047-63658063	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv821649	chr6:63511879-63888251	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv1025099	chr6:63514227-64055649	Genic enhancers Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
10	nsv885984	chr6:63534312-63722285	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv885985	chr6:63534312-63753657	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv885986	chr6:63534312-63774385	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv885988	chr6:63615339-63830759	Weak transcription Flanking Active TSS Enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:63653000-63653400	Active TSS	Breast Myoepithelial Primary Cells	Breast

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