Variant report

Variant	rs437945
Chromosome Location	chr8:59966879-59966880
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs310368	0.89[MEX][hapmap];0.82[ASN][1000 genomes]
rs310373	0.89[MEX][hapmap]
rs394226	1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs415569	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs417476	0.81[ASN][1000 genomes]
rs426345	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs529868	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[ASN][1000 genomes]

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59949200-59971000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:59957000-59967600	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr8:59957200-59967600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr8:59957800-59989800	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr8:59958600-59967000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr8:59958600-59971000	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr8:59958800-59967800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr8:59958800-59967800	Weak transcription	Small Intestine	intestine
9	chr8:59961200-59967600	Weak transcription	Fetal Thymus	thymus
10	chr8:59962800-59970800	Weak transcription	Fetal Stomach	stomach
11	chr8:59963000-59967800	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr8:59963000-59968000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr8:59963400-59967600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr8:59963400-59969400	Weak transcription	Duodenum Mucosa	Duodenum
15	chr8:59963600-59971000	Weak transcription	Stomach Smooth Muscle	stomach
16	chr8:59965200-59967600	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr8:59965200-59971400	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr8:59965400-59967600	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr8:59965400-59967600	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr8:59965800-59967000	Enhancers	Rectal Smooth Muscle	rectum
21	chr8:59965800-59967600	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr8:59965800-59968000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr8:59965800-59968200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr8:59965800-59968400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr8:59965800-59968400	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr8:59965800-59968400	Enhancers	NHDF-Ad	bronchial
27	chr8:59965800-59973000	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr8:59966000-59967000	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr8:59966000-59968600	Enhancers	Colon Smooth Muscle	Colon
30	chr8:59966000-59970800	Weak transcription	Gastric	stomach
31	chr8:59966200-59967600	Enhancers	Primary T cells from cord blood	blood
32	chr8:59966200-59968000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
33	chr8:59966400-59967600	Enhancers	ES-I3 Cell Line	embryonic stem cell
34	chr8:59966400-59968600	Weak transcription	Fetal Heart	heart
35	chr8:59966600-59967000	Enhancers	Brain Germinal Matrix	brain
36	chr8:59966600-59967400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
37	chr8:59966800-59967000	Enhancers	H1 Cell Line	embryonic stem cell
38	chr8:59966800-59967000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
39	chr8:59966800-59967000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
40	chr8:59966800-59967000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr8:59966800-59967000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr8:59966800-59967000	Active TSS	Rectal Mucosa Donor 29	rectum
43	chr8:59966800-59967000	Enhancers	Thymus	Thymus
44	chr8:59966800-59967000	Flanking Active TSS	Osteobl	bone
45	chr8:59966800-59967400	Flanking Active TSS	Primary hematopoietic stem cells	blood
46	chr8:59966800-59967400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
47	chr8:59966800-59967400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr8:59966800-59967600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
49	chr8:59966800-59967800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr8:59966800-59967800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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