Variant report

Variant	rs4380928
Chromosome Location	chr8:60609180-60609181
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs16925154	1.00[AFR][1000 genomes]
rs16925398	0.84[AFR][1000 genomes]
rs7018032	1.00[AFR][1000 genomes]
rs7821982	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030564	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv539630	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60606200-60610000	Enhancers	Fetal Stomach	stomach
2	chr8:60606600-60611000	Enhancers	Hela-S3	cervix
3	chr8:60606800-60610800	Enhancers	NHDF-Ad	bronchial
4	chr8:60607200-60609200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr8:60607800-60609400	Weak transcription	Stomach Smooth Muscle	stomach
6	chr8:60607800-60610200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr8:60607800-60610400	Weak transcription	Rectal Smooth Muscle	rectum
8	chr8:60608200-60609200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr8:60608200-60609400	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr8:60608400-60609400	Weak transcription	NH-A	brain
11	chr8:60608600-60609200	Weak transcription	HMEC	breast
12	chr8:60608600-60609400	Weak transcription	Fetal Lung	lung
13	chr8:60608800-60609200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr8:60608800-60609400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr8:60609000-60609800	Weak transcription	Colon Smooth Muscle	Colon
16	chr8:60609000-60610200	Enhancers	Osteobl	bone

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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