Variant report

Variant	rs4381913
Chromosome Location	chr3:151259346-151259347
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:151258944..151262061-chr3:151269101..151271592,3	MCF-7	breast:
2	chr3:151182500..151185282-chr3:151257399..151260037,2	K562	blood:
3	chr3:151224469..151226517-chr3:151258959..151260650,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10935861	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12630095	0.89[CEU][hapmap]
rs4605517	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4679836	0.92[CEU][hapmap];0.90[JPT][hapmap]
rs4679837	0.81[CEU][hapmap];0.83[JPT][hapmap]
rs4680465	0.92[CEU][hapmap];0.90[JPT][hapmap]
rs4680501	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6798066	0.89[CEU][hapmap];0.81[JPT][hapmap]
rs7427312	0.83[EUR][1000 genomes]
rs9289849	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9817125	0.92[CEU][hapmap];0.91[JPT][hapmap]
rs9836445	0.82[EUR][1000 genomes]
rs9849929	0.92[CEU][hapmap];0.90[JPT][hapmap]
rs9850195	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv995048	chr3:151114074-151560019	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv877650	chr3:151174010-151314449	Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:151254400-151261200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr3:151255800-151261000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr3:151255800-151261000	Weak transcription	HMEC	breast
4	chr3:151256800-151268600	Weak transcription	Right Atrium	heart
5	chr3:151257000-151261200	Weak transcription	NH-A	brain
6	chr3:151257200-151261000	Weak transcription	K562	blood
7	chr3:151257200-151261200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:151257200-151261200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr3:151257200-151261200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr3:151257200-151261200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr3:151257200-151261200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr3:151257400-151261000	Weak transcription	Ovary	ovary
13	chr3:151257400-151261200	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr3:151257400-151262200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr3:151257400-151271600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr3:151257600-151261000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr3:151257600-151261200	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr3:151257600-151261400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr3:151257600-151261600	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr3:151257600-151270000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr3:151257800-151261000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr3:151258200-151259800	Enhancers	Fetal Lung	lung
23	chr3:151258600-151259800	Enhancers	Muscle Satellite Cultured Cells	--
24	chr3:151258800-151259800	Enhancers	Hela-S3	cervix
25	chr3:151259200-151259400	Enhancers	A549	lung

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