Variant report

Variant	rs4382094
Chromosome Location	chr4:54731701-54731702
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1466829	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1466832	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1466833	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17083585	0.87[ASN][1000 genomes]
rs17083601	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17083603	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17083606	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17083607	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28414550	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28537559	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4632721	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58241271	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6816667	0.87[ASN][1000 genomes]
rs6852777	0.87[ASN][1000 genomes]
rs73143864	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73817125	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014792	chr4:54655382-54768963	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537095	chr4:54655382-54768963	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv879017	chr4:54656948-54784205	Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv879018	chr4:54714753-55030375	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54730200-54738600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:54730800-54732400	Enhancers	Right Ventricle	heart
3	chr4:54731000-54732000	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr4:54731000-54732400	Enhancers	Left Ventricle	heart
5	chr4:54731000-54733200	Enhancers	Fetal Heart	heart
6	chr4:54731200-54738400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr4:54731400-54731800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
8	chr4:54731400-54731800	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr4:54731400-54732000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr4:54731600-54732600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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