Variant report

Variant	rs4385905
Chromosome Location	chr11:120394576-120394577
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:120390421..120392363-chr11:120394068..120396369,3	MCF-7	breast:
2	chr11:120389366..120391441-chr11:120393017..120395812,2	K562	blood:
3	chr11:120394061..120394845-chr11:120670188..120670710,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs34160337	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35187805	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35594498	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3897570	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61900865	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61900866	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61900867	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61900868	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61900870	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61900871	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61900873	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61900874	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61900875	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61900876	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61900877	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61900894	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7103982	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71484175	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71484176	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71484177	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71484178	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73008710	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv1051115	chr11:120376808-120446434	Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv556475	chr11:120387828-120396485	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120388400-120397600	Weak transcription	Brain Cingulate Gyrus	brain
2	chr11:120388400-120397800	Weak transcription	Brain Substantia Nigra	brain
3	chr11:120388800-120403400	Weak transcription	Right Atrium	heart
4	chr11:120393400-120394600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:120393400-120394600	Enhancers	Primary B cells from peripheral blood	blood
6	chr11:120393400-120394600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
7	chr11:120393600-120394600	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr11:120393600-120394600	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr11:120393600-120394600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr11:120393600-120394600	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr11:120393600-120394600	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr11:120393600-120394600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr11:120393600-120394600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr11:120393600-120394600	Bivalent Enhancer	Fetal Lung	lung
15	chr11:120393600-120394600	Enhancers	Placenta	Placenta
16	chr11:120393600-120394600	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
17	chr11:120393800-120394600	Enhancers	H1 Cell Line	embryonic stem cell
18	chr11:120393800-120394600	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr11:120393800-120394600	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr11:120393800-120394600	Bivalent Enhancer	Duodenum Mucosa	Duodenum
21	chr11:120393800-120394600	Enhancers	HSMMtube	muscle
22	chr11:120393800-120395400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr11:120393800-120396400	Bivalent Enhancer	Fetal Intestine Small	intestine
24	chr11:120394000-120394600	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
25	chr11:120394000-120394600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr11:120394000-120394600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr11:120394000-120394600	Enhancers	iPS-20b Cell Line	embryonic stem cell
28	chr11:120394000-120394600	Bivalent Enhancer	Adipose Nuclei	Adipose
29	chr11:120394000-120397600	Weak transcription	Brain Anterior Caudate	brain
30	chr11:120394200-120394600	Enhancers	Brain Hippocampus Middle	brain
31	chr11:120394200-120395000	Bivalent Enhancer	Fetal Intestine Large	intestine
32	chr11:120394200-120395000	Enhancers	Spleen	Spleen
33	chr11:120394200-120395400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr11:120394200-120398000	Weak transcription	Brain Angular Gyrus	brain
35	chr11:120394200-120398000	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr11:120394400-120394600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
37	chr11:120394400-120394600	Bivalent Enhancer	HepG2	liver
38	chr11:120394400-120397800	Weak transcription	Ovary	ovary
39	chr11:120394400-120398200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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