Variant report

Variant	rs438766
Chromosome Location	chr6:100897259-100897260
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:100895834..100897830-chr6:100900574..100903178,3	K562	blood:
2	chr6:100895834..100897830-chr6:100900625..100903178,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949535	chr6:100740293-101469052	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1028122	chr6:100774245-100964347	Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1023710	chr6:100810738-101001115	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv538388	chr6:100810738-101001115	Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
5	nsv515895	chr6:100868779-100910798	Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
6	nsv533053	chr6:100883636-100911512	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:100894000-100897600	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:100894400-100897600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
3	chr6:100894400-100898000	Strong transcription	Muscle Satellite Cultured Cells	--
4	chr6:100894600-100901600	Weak transcription	Psoas Muscle	Psoas
5	chr6:100895200-100897400	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:100895200-100897400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:100895200-100897600	Bivalent Enhancer	Right Ventricle	heart
8	chr6:100895400-100897400	Strong transcription	HSMMtube	muscle
9	chr6:100895400-100898400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr6:100895400-100898400	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr6:100895800-100897600	Strong transcription	Skeletal Muscle Female	skeletal muscle
12	chr6:100896200-100897400	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr6:100896200-100897400	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr6:100896200-100897800	Strong transcription	Pancreatic Islets	Pancreatic Islet
15	chr6:100896400-100897600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
16	chr6:100896400-100897600	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr6:100896400-100898200	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
18	chr6:100896400-100899200	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr6:100896800-100897400	Bivalent Enhancer	HUVEC	blood vessel
20	chr6:100897000-100897400	Bivalent Enhancer	Lung	lung
21	chr6:100897000-100897600	Bivalent Enhancer	Esophagus	oesophagus
22	chr6:100897200-100897400	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr6:100897200-100897400	Bivalent Enhancer	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr6:100897200-100897400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
25	chr6:100897200-100897400	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
26	chr6:100897200-100897400	Bivalent Enhancer	Fetal Stomach	stomach
27	chr6:100897200-100897400	Flanking Active TSS	Gastric	stomach
28	chr6:100897200-100897400	Enhancers	Right Atrium	heart
29	chr6:100897200-100897400	Bivalent Enhancer	Stomach Smooth Muscle	stomach
30	chr6:100897200-100897400	ZNF genes & repeats	HSMM	muscle
31	chr6:100897200-100897800	ZNF genes & repeats	Pancreas	Pancrea

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