Variant report

Variant	rs4390341
Chromosome Location	chr11:8745711-8745712
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:8745341..8747316-chr11:8750121..8752572,2	MCF-7	breast:
2	chr11:8739900..8744386-chr11:8745369..8750564,8	K562	blood:
3	chr11:8734555..8736932-chr11:8744391..8746005,2	K562	blood:
4	chr11:8701660..8705909-chr11:8738922..8746228,9	MCF-7	breast:
5	chr11:8727495..8731170-chr11:8743680..8746137,4	K562	blood:
6	chr11:8741961..8745889-chr11:8746837..8751403,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166444	Chromatin interaction
ENSG00000166441	Chromatin interaction
ENSG00000200983	Chromatin interaction

rs_ID	r²[population]
rs10522860	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10769956	0.85[EUR][1000 genomes]
rs11042070	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11042072	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17337866	0.82[ASN][1000 genomes]
rs3915868	0.82[ASN][1000 genomes]
rs4929915	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8734800-8746800	Genic enhancers	Fetal Intestine Small	intestine
2	chr11:8735400-8753400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr11:8735600-8748200	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr11:8736200-8773800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr11:8738000-8746800	Enhancers	Stomach Mucosa	stomach
6	chr11:8739400-8746000	Enhancers	Fetal Intestine Large	intestine
7	chr11:8739400-8750200	Weak transcription	Brain Germinal Matrix	brain
8	chr11:8740600-8746400	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr11:8740800-8746400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr11:8740800-8748200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:8741000-8746800	Genic enhancers	Fetal Muscle Leg	muscle
12	chr11:8742000-8746400	Enhancers	Rectal Smooth Muscle	rectum
13	chr11:8742200-8746000	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr11:8742200-8746800	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr11:8742200-8749200	Weak transcription	Fetal Brain Male	brain
16	chr11:8742400-8748400	Weak transcription	Aorta	Aorta
17	chr11:8742400-8750200	Weak transcription	Psoas Muscle	Psoas
18	chr11:8742600-8746200	Enhancers	H1 Cell Line	embryonic stem cell
19	chr11:8742600-8754000	Weak transcription	Hela-S3	cervix
20	chr11:8743000-8746600	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr11:8743200-8746600	Genic enhancers	Cortex derived primary cultured neurospheres	brain
22	chr11:8743400-8746800	Genic enhancers	Duodenum Mucosa	Duodenum
23	chr11:8743600-8746200	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr11:8743600-8746200	Weak transcription	Brain Cingulate Gyrus	brain
25	chr11:8744000-8746400	Weak transcription	Gastric	stomach
26	chr11:8744000-8746600	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr11:8744000-8747400	Weak transcription	Brain Substantia Nigra	brain
28	chr11:8744000-8748200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr11:8744000-8752800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr11:8744000-8754200	Weak transcription	A549	lung
31	chr11:8744200-8746000	Weak transcription	Fetal Kidney	kidney
32	chr11:8744200-8746200	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr11:8744200-8746600	Genic enhancers	Fetal Muscle Trunk	muscle
34	chr11:8744200-8757600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
35	chr11:8744400-8745800	Weak transcription	HMEC	breast
36	chr11:8744400-8746000	Weak transcription	NH-A	brain
37	chr11:8744400-8746000	Genic enhancers	NHLF	lung
38	chr11:8744400-8748600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr11:8744400-8750200	Weak transcription	Brain Anterior Caudate	brain
40	chr11:8744400-8750200	Weak transcription	Fetal Brain Female	brain
41	chr11:8744600-8745800	Weak transcription	Esophagus	oesophagus
42	chr11:8744600-8746000	Weak transcription	Osteobl	bone
43	chr11:8744600-8746200	Genic enhancers	Stomach Smooth Muscle	stomach
44	chr11:8744600-8747800	Strong transcription	NHEK	skin
45	chr11:8744600-8748000	Strong transcription	Muscle Satellite Cultured Cells	--
46	chr11:8744600-8748200	Weak transcription	Fetal Thymus	thymus
47	chr11:8744600-8748600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr11:8744600-8749000	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr11:8744600-8749000	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr11:8744600-8750600	Weak transcription	HepG2	liver

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