Variant report

Variant	rs439467
Chromosome Location	chr9:10102903-10102904
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs159226	0.88[ASW][hapmap];0.83[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.91[JPT][hapmap];0.87[LWK][hapmap];0.82[TSI][hapmap];0.82[AFR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs159227	0.87[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs291294	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.81[LWK][hapmap];0.87[TSI][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs291296	0.82[ASW][hapmap]
rs291311	0.83[JPT][hapmap]
rs291313	0.89[ASN][1000 genomes]
rs291314	0.83[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs291315	0.87[CHB][hapmap];0.86[JPT][hapmap];0.81[AFR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs291323	0.87[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs291325	0.92[ASN][1000 genomes]
rs291326	0.85[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs291327	0.87[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs291328	0.86[CHB][hapmap];0.88[CHD][hapmap];0.83[GIH][hapmap];0.95[JPT][hapmap];0.85[TSI][hapmap];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs294873	0.81[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs364297	0.88[ASW][hapmap];0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.92[TSI][hapmap];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs367461	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs368114	0.95[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.89[YRI][hapmap];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs379409	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs381343	0.90[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.88[MKK][hapmap];0.86[YRI][hapmap]
rs383865	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs389221	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs392288	0.91[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs397146	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs397800	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs399010	0.85[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs403114	0.87[ASW][hapmap]
rs404317	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs412585	0.88[ASN][1000 genomes]
rs417275	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs424265	0.87[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.82[LWK][hapmap];0.87[MKK][hapmap]
rs424301	0.88[ASW][hapmap]
rs436563	0.88[ASW][hapmap];0.87[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.81[LWK][hapmap]
rs438111	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs440533	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs440834	0.87[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.82[LWK][hapmap];0.87[MKK][hapmap]
rs443697	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs446601	0.91[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs447770	0.87[CHB][hapmap];0.86[CHD][hapmap];0.95[JPT][hapmap]
rs447925	0.87[CHB][hapmap];0.87[CHD][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs450009	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs450485	0.83[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap]
rs450818	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs452582	0.83[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap]
rs452746	0.87[CHB][hapmap];0.91[CHD][hapmap];0.91[JPT][hapmap];0.82[LWK][hapmap];0.87[MKK][hapmap]
rs832262	0.82[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.80[YRI][hapmap]
rs860563	0.91[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.82[LWK][hapmap];0.91[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034731	chr9:9776126-10481262	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv892295	chr9:9832245-10380406	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1021380	chr9:9943339-10126281	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv539989	chr9:9943339-10126281	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv892301	chr9:9971050-10144584	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv892302	chr9:9974221-10158866	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1030657	chr9:10002355-10481262	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv831506	chr9:10040172-10204609	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv824850	chr9:10058091-10134157	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv892304	chr9:10061872-10119157	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv892305	chr9:10061872-10123735	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv613372	chr9:10077180-10102903	Enhancers Weak transcription Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
13	nsv892306	chr9:10077180-10127876	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
14	nsv471279	chr9:10081386-10115338	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
15	nsv466156	chr9:10081387-10115338	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
16	nsv613373	chr9:10081387-10115338	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
17	nsv892307	chr9:10081387-10123735	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
18	nsv1021508	chr9:10101315-10131581	Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
19	nsv973448	chr9:10101449-10109431	Weak transcription Flanking Active TSS Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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