Variant report

Variant	rs439476
Chromosome Location	chr15:93144352-93144353
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr15:93144344-93144404	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:93143236..93145258-chr15:93175927..93177616,2	MCF-7	breast:
2	chr15:93143587..93145344-chr15:93159569..93162051,2	MCF-7	breast:
3	chr15:93143897..93146395-chr15:93188108..93190143,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000271763	TF binding region
ENSG00000260337	TF binding region
ENSG00000185442	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs285715	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs285717	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs400225	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs409943	0.94[EUR][1000 genomes]
rs418340	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs428040	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs441604	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs452555	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs453916	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56316215	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56398031	0.80[EUR][1000 genomes]
rs6496959	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6496960	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948621	chr15:92688981-93158095	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1037972	chr15:92804908-93270761	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
3	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
4	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
5	nsv1049490	chr15:93134405-93591660	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93128400-93152200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:93139400-93159800	Weak transcription	Fetal Lung	lung
3	chr15:93140600-93146600	Weak transcription	Esophagus	oesophagus
4	chr15:93142000-93144800	Enhancers	Brain Angular Gyrus	brain
5	chr15:93142000-93145200	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr15:93142000-93145400	Enhancers	Left Ventricle	heart
7	chr15:93142200-93145000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr15:93142200-93145200	Enhancers	Brain Cingulate Gyrus	brain
9	chr15:93142200-93156400	Weak transcription	Lung	lung
10	chr15:93142200-93160400	Weak transcription	Right Atrium	heart
11	chr15:93142400-93145200	Enhancers	Brain Substantia Nigra	brain
12	chr15:93142400-93145400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr15:93142400-93152400	Weak transcription	Fetal Muscle Trunk	muscle
14	chr15:93142600-93145000	Enhancers	Brain Hippocampus Middle	brain
15	chr15:93143200-93144800	Weak transcription	Fetal Muscle Leg	muscle
16	chr15:93143400-93146800	Weak transcription	HSMMtube	muscle
17	chr15:93143600-93144800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr15:93143600-93144800	Weak transcription	Brain Anterior Caudate	brain
19	chr15:93143600-93160000	Weak transcription	Right Ventricle	heart
20	chr15:93144000-93144400	Enhancers	Stomach Mucosa	stomach
21	chr15:93144000-93145000	Enhancers	Pancreas	Pancrea
22	chr15:93144200-93144400	Enhancers	Gastric	stomach
23	chr15:93144200-93144400	Enhancers	HSMM	muscle
24	chr15:93144200-93144800	Enhancers	Breast Myoepithelial Primary Cells	Breast

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