Variant report

Variant	rs4398903
Chromosome Location	chr8:52654118-52654119
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:52652822..52654740-chr8:52669387..52671490,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10089130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10100917	0.90[AMR][1000 genomes]
rs10448047	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11985113	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12156370	0.90[AMR][1000 genomes]
rs13249576	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13259567	0.83[AMR][1000 genomes]
rs13270730	0.91[AMR][1000 genomes]
rs4242469	0.90[AMR][1000 genomes]
rs4242471	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4272368	0.90[AMR][1000 genomes]
rs4346984	0.81[AFR][1000 genomes]
rs4354299	0.90[AMR][1000 genomes]
rs4377956	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4410894	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4477010	0.90[AMR][1000 genomes]
rs4549760	0.90[AMR][1000 genomes]
rs4873203	1.00[AMR][1000 genomes]
rs4873585	0.90[AMR][1000 genomes]
rs4873586	0.90[AMR][1000 genomes]
rs4873587	0.90[AMR][1000 genomes]
rs4873589	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4873590	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7836384	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs876150	0.88[YRI][hapmap];0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932026	chr8:51858658-52758574	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv817615	chr8:52252405-53023384	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1018429	chr8:52411443-52878946	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv1034856	chr8:52411443-52886765	Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv890898	chr8:52579964-52680933	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv1817480	chr8:52643151-52654831	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:52644000-52665400	Weak transcription	Right Ventricle	heart

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