Variant report

Variant	rs4399447
Chromosome Location	chr13:52227440-52227441
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1058141	0.81[AMR][1000 genomes]
rs12427805	0.81[AMR][1000 genomes]
rs12430600	0.81[AMR][1000 genomes]
rs17069413	0.83[AMR][1000 genomes]
rs17075849	0.83[AMR][1000 genomes]
rs2011276	0.81[AMR][1000 genomes]
rs2408491	0.81[AMR][1000 genomes]
rs55910561	0.81[AMR][1000 genomes]
rs57837262	0.81[AMR][1000 genomes]
rs73199750	0.81[AMR][1000 genomes]
rs7321346	0.83[AMR][1000 genomes]
rs7329391	0.80[AMR][1000 genomes]
rs74086223	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832612	chr13:52176983-52362525	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52219600-52253800	Weak transcription	Psoas Muscle	Psoas
2	chr13:52219800-52233800	Weak transcription	A549	lung
3	chr13:52220400-52259000	Weak transcription	Thymus	Thymus
4	chr13:52220600-52227600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr13:52220600-52228200	Weak transcription	Esophagus	oesophagus
6	chr13:52220600-52228400	Weak transcription	Lung	lung
7	chr13:52220600-52233400	Weak transcription	Ovary	ovary
8	chr13:52220600-52233400	Weak transcription	Right Atrium	heart
9	chr13:52220600-52236400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr13:52220800-52229800	Weak transcription	Adipose Nuclei	Adipose
11	chr13:52220800-52233600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr13:52221000-52227800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr13:52221000-52228000	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr13:52221000-52229200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr13:52221000-52235800	Weak transcription	HSMM	muscle
16	chr13:52221200-52228000	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr13:52221200-52228000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr13:52221200-52228400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr13:52221200-52253800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr13:52221400-52227800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr13:52221400-52228000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr13:52221600-52233400	Weak transcription	Osteobl	bone
23	chr13:52221600-52238000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr13:52222400-52229600	Weak transcription	HepG2	liver
25	chr13:52223600-52227800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr13:52223600-52228000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr13:52223600-52228000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr13:52223600-52228200	Weak transcription	Aorta	Aorta
29	chr13:52223600-52228200	Weak transcription	Pancreas	Pancrea
30	chr13:52227400-52228200	Weak transcription	Duodenum Mucosa	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links