Variant report

Variant	rs4400166
Chromosome Location	chr5:41188291-41188292
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2910649	0.83[ASN][1000 genomes]
rs34728787	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4413571	1.00[CEU][hapmap];0.83[CHB][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs444312	0.84[ASN][1000 genomes]
rs4957383	0.84[ASN][1000 genomes]
rs62361640	0.82[ASN][1000 genomes]
rs7723553	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4400166	OSMR	cis	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41183400-41192200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr5:41184800-41195200	Weak transcription	Pancreas	Pancrea
3	chr5:41185200-41203200	Weak transcription	Fetal Intestine Small	intestine
4	chr5:41186600-41189000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr5:41186600-41195000	Weak transcription	Fetal Intestine Large	intestine
6	chr5:41187600-41188400	Weak transcription	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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