Variant report

Variant	rs4401728
Chromosome Location	chr7:70925235-70925236
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:70923018..70925671-chr7:70952208..70954590,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs2906270	1.00[CEU][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes]
rs2906276	1.00[CEU][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes]
rs2960887	1.00[CEU][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes]
rs2960888	1.00[CEU][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes]
rs4236251	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4388345	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4415208	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4484574	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61737661	0.82[EUR][1000 genomes]
rs6460654	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70905000-70929000	Weak transcription	Right Atrium	heart
2	chr7:70908400-70935200	Weak transcription	Fetal Lung	lung
3	chr7:70916000-70926400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:70920400-70926000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr7:70921600-70925400	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr7:70921600-70927000	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr7:70922200-70926000	Enhancers	Fetal Muscle Leg	muscle
8	chr7:70923400-70927000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr7:70923400-70928200	Weak transcription	Ovary	ovary
10	chr7:70923600-70927000	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr7:70923800-70926600	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr7:70923800-70926600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr7:70923800-70926800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr7:70923800-70927200	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr7:70923800-70927200	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr7:70923800-70927400	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr7:70923800-70935200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr7:70924000-70926600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr7:70924000-70926600	Weak transcription	Left Ventricle	heart
20	chr7:70924000-70928800	Weak transcription	Right Ventricle	heart
21	chr7:70924600-70925400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr7:70924600-70925800	Weak transcription	Fetal Heart	heart
23	chr7:70925000-70926200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr7:70925000-70926200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr7:70925200-70926200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr7:70925200-70926200	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr7:70925200-70926600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr7:70925200-70926600	Weak transcription	Skeletal Muscle Male	skeletal muscle

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