Variant report

Variant	rs4402660
Chromosome Location	chr18:44277110-44277111
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11872518	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11872859	0.81[EUR][1000 genomes]
rs11873719	0.81[EUR][1000 genomes]
rs2155987	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4890686	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4890687	0.82[ASN][1000 genomes]
rs71364555	0.81[EUR][1000 genomes]
rs71364560	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs71364561	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs71364562	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs71364563	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7229344	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7232509	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8089484	0.82[ASN][1000 genomes]
rs8097565	0.84[ASN][1000 genomes]
rs948569	0.82[ASN][1000 genomes]
rs948570	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428355	chr18:44160181-44406285	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv9629	chr18:44264693-44757511	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	esv3397234	chr18:44276654-44279552	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:44253000-44291400	Weak transcription	Brain Cingulate Gyrus	brain
2	chr18:44258200-44280000	Weak transcription	HSMMtube	muscle
3	chr18:44260800-44286600	Weak transcription	Brain Germinal Matrix	brain
4	chr18:44273200-44288000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr18:44275800-44278400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr18:44276600-44286600	Weak transcription	Left Ventricle	heart
7	chr18:44277000-44282200	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr18:44277000-44282200	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr18:44277000-44282400	Weak transcription	Psoas Muscle	Psoas

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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