Variant report

Variant	rs4408491
Chromosome Location	chr15:93381811-93381812
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:93379967..93382246-chr15:93425134..93427324,2	K562	blood:
2	chr15:93366674..93369761-chr15:93378283..93382019,3	MCF-7	breast:
3	chr15:93373081..93377290-chr15:93381619..93384453,4	K562	blood:
4	chr15:93380005..93386167-chr15:93423963..93429522,11	MCF-7	breast:
5	chr15:93371759..93374581-chr15:93381519..93384451,2	K562	blood:
6	chr15:93381627..93383686-chr15:93423658..93428210,5	MCF-7	breast:
7	chr15:93380723..93382246-chr15:93425134..93426946,2	K562	blood:
8	chr15:93381669..93383424-chr15:93412314..93413957,2	MCF-7	breast:
9	chr15:93352585..93355204-chr15:93381631..93384921,5	MCF-7	breast:
10	chr15:93381796..93383534-chr15:93427631..93429257,2	K562	blood:
11	chr15:93380616..93384575-chr15:93388777..93392228,3	MCF-7	breast:
12	chr15:93363513..93367138-chr15:93377959..93381843,5	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000173575	Chromatin interaction
ENSG00000185442	Chromatin interaction
ENSG00000272888	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11074108	0.84[EUR][1000 genomes]
rs11074109	0.83[EUR][1000 genomes]
rs11074110	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11074111	0.85[EUR][1000 genomes]
rs12591890	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12592319	0.84[EUR][1000 genomes]
rs28360722	0.85[EUR][1000 genomes]
rs28445686	0.85[EUR][1000 genomes]
rs28613292	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28734059	0.81[ASN][1000 genomes]
rs4777740	0.85[EUR][1000 genomes]
rs4777741	0.85[EUR][1000 genomes]
rs4777742	0.85[EUR][1000 genomes]
rs6496994	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66967198	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7184028	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8023522	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8027176	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8027321	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8028071	0.98[ASN][1000 genomes]
rs8029902	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8030383	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8031154	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8031163	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
2	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
3	nsv1049490	chr15:93134405-93591660	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
4	nsv530846	chr15:93323949-94030462	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93374200-93383200	Weak transcription	Lung	lung
2	chr15:93376000-93383000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr15:93376600-93382000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr15:93376800-93382000	Weak transcription	Placenta	Placenta
5	chr15:93376800-93383000	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr15:93376800-93387000	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr15:93377000-93383000	Weak transcription	Spleen	Spleen
8	chr15:93377000-93387200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr15:93377200-93388000	Weak transcription	Brain Angular Gyrus	brain
10	chr15:93377400-93382800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr15:93377400-93382800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr15:93377400-93383000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr15:93377400-93383000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr15:93377400-93383000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr15:93377400-93383000	Weak transcription	Brain Anterior Caudate	brain
16	chr15:93377400-93383000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr15:93377400-93383000	Weak transcription	Pancreas	Pancrea
18	chr15:93377400-93383000	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr15:93377400-93383000	Weak transcription	K562	blood
20	chr15:93377800-93386600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr15:93378000-93383000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr15:93378200-93382600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr15:93378600-93383000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr15:93378600-93383000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr15:93378800-93383000	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr15:93379000-93387000	Weak transcription	Primary hematopoietic stem cells	blood
27	chr15:93379200-93382400	Weak transcription	Primary B cells from peripheral blood	blood
28	chr15:93379200-93382600	Weak transcription	GM12878-XiMat	blood
29	chr15:93380400-93385000	Enhancers	Fetal Thymus	thymus
30	chr15:93380600-93383000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
31	chr15:93380800-93383200	Enhancers	Dnd41	blood
32	chr15:93380800-93384600	Enhancers	Thymus	Thymus
33	chr15:93381000-93383000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr15:93381200-93383800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr15:93381400-93382000	Enhancers	HUES6 Cell Line	embryonic stem cell
36	chr15:93381400-93382000	Enhancers	Cortex derived primary cultured neurospheres	brain
37	chr15:93381400-93382400	Enhancers	Primary T helper naive cells from peripheral blood	blood
38	chr15:93381400-93383000	Enhancers	Primary neutrophils fromperipheralblood	blood
39	chr15:93381400-93384000	Enhancers	Primary T killer memory cells from peripheral blood	blood
40	chr15:93381400-93384200	Enhancers	Primary T helper cells fromperipheralblood	blood
41	chr15:93381400-93384800	Enhancers	Primary T cells from cord blood	blood
42	chr15:93381400-93385000	Enhancers	Primary T cells fromperipheralblood	blood
43	chr15:93381600-93382000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr15:93381600-93382000	Enhancers	HepG2	liver
45	chr15:93381600-93383000	Enhancers	Primary T helper cells PMA-I stimulated	--
46	chr15:93381600-93383000	Weak transcription	Aorta	Aorta
47	chr15:93381600-93384200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
48	chr15:93381800-93382000	Enhancers	Primary B cells from cord blood	blood
49	chr15:93381800-93382800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr15:93381800-93383000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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