Variant report

Variant	rs440884
Chromosome Location	chr12:45317897-45317898
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1004593	0.86[CEU][hapmap]
rs10880693	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11182702	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11182703	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11182707	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1224434	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1224435	0.80[EUR][1000 genomes]
rs1224438	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1224439	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1224440	0.81[EUR][1000 genomes]
rs1224442	0.88[CEU][hapmap]
rs1224444	0.80[EUR][1000 genomes]
rs1224445	0.88[CEU][hapmap];0.80[EUR][1000 genomes]
rs1224446	0.80[EUR][1000 genomes]
rs1224448	0.80[EUR][1000 genomes]
rs1506677	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1826711	0.88[CEU][hapmap]
rs1921550	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1921551	0.80[EUR][1000 genomes]
rs2055673	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2055674	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2544101	0.88[CEU][hapmap]
rs2643136	0.92[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2643138	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2658972	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs268044	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs268046	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs268047	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs268048	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2710419	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2710452	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2731034	0.85[CEU][hapmap]
rs2731038	0.88[CEU][hapmap]
rs2731039	0.89[CEU][hapmap]
rs2731049	0.89[CEU][hapmap]
rs370814	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs374871	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3847982	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4312124	0.80[EUR][1000 genomes]
rs7295673	0.95[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899049	chr12:45299202-45376053	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv899050	chr12:45299202-45400614	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv899051	chr12:45307633-45376053	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs440884	NELL2	cis	Adipose Subcutaneous	GTEx
rs440884	NELL2	cis	Artery Tibial	GTEx

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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