Variant report

Variant	rs4410068
Chromosome Location	chr16:81814053-81814054
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11643895	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4254322	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4319763	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4398100	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4476173	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4888174	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56704282	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7198003	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7198169	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9937776	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9944351	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948448	chr16:81198147-81906766	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
2	nsv573365	chr16:81804972-81975892	Strong transcription Bivalent/Poised TSS Weak transcription ZNF genes & repeats Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv3372455	chr16:81810851-81815149	Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81812200-81814200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
2	chr16:81812200-81814200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr16:81812200-81814200	Bivalent/Poised TSS	Fetal Kidney	kidney
4	chr16:81812400-81815000	Active TSS	GM12878-XiMat	blood
5	chr16:81812600-81814200	Bivalent/Poised TSS	Skeletal Muscle Female	skeletal muscle
6	chr16:81813200-81814200	Flanking Active TSS	Adipose Nuclei	Adipose
7	chr16:81813200-81814200	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
8	chr16:81813200-81814400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
9	chr16:81813400-81814400	Flanking Active TSS	Primary B cells from cord blood	blood
10	chr16:81813400-81814400	Flanking Active TSS	Primary hematopoietic stem cells	blood
11	chr16:81813400-81814400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr16:81813600-81814200	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
13	chr16:81813600-81814200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
14	chr16:81813600-81814200	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
15	chr16:81813600-81814200	Bivalent/Poised TSS	Brain Anterior Caudate	brain
16	chr16:81813600-81814200	Flanking Active TSS	Spleen	Spleen
17	chr16:81813600-81814400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
18	chr16:81813800-81814200	Flanking Active TSS	Primary B cells from peripheral blood	blood
19	chr16:81813800-81814200	Bivalent/Poised TSS	Primary T cells from cord blood	blood
20	chr16:81813800-81814200	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
21	chr16:81813800-81814200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr16:81813800-81814200	Flanking Active TSS	Duodenum Mucosa	Duodenum
23	chr16:81813800-81814200	Flanking Bivalent TSS/Enh	Duodenum Smooth Muscle	Duodenum
24	chr16:81813800-81814200	Bivalent Enhancer	Fetal Thymus	thymus
25	chr16:81813800-81814400	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
26	chr16:81813800-81814400	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
27	chr16:81813800-81814600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
28	chr16:81813800-81816400	Weak transcription	Lung	lung
29	chr16:81813800-81817200	Weak transcription	Left Ventricle	heart
30	chr16:81813800-81817800	Weak transcription	Right Atrium	heart
31	chr16:81814000-81814200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
32	chr16:81814000-81814200	Bivalent Enhancer	Esophagus	oesophagus
33	chr16:81814000-81814200	Bivalent Enhancer	Fetal Intestine Small	intestine
34	chr16:81814000-81814200	Enhancers	Pancreas	Pancrea
35	chr16:81814000-81814200	Bivalent Enhancer	Rectal Mucosa Donor 31	rectum
36	chr16:81814000-81814400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
37	chr16:81814000-81814400	Bivalent Enhancer	Placenta	Placenta
38	chr16:81814000-81816400	Weak transcription	Small Intestine	intestine
39	chr16:81814000-81817200	Weak transcription	Liver	Liver
40	chr16:81814000-81817600	Weak transcription	Gastric	stomach

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