Variant report

Variant	rs441009
Chromosome Location	chr5:79412237-79412238
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:79410679..79412376-chr5:79415875..79417383,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs173949	0.83[AMR][1000 genomes]
rs256434	0.83[AMR][1000 genomes]
rs256436	0.86[AMR][1000 genomes]
rs452106	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432748	chr5:79300434-79577760	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv598744	chr5:79388745-79423347	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv516093	chr5:79411248-79412328	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79403000-79413000	Weak transcription	Dnd41	blood
2	chr5:79406200-79421000	Weak transcription	Right Ventricle	heart
3	chr5:79406600-79413000	Weak transcription	Ovary	ovary
4	chr5:79406800-79415200	Weak transcription	Fetal Muscle Trunk	muscle
5	chr5:79407400-79424000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr5:79408000-79412400	Weak transcription	Pancreas	Pancrea
7	chr5:79409000-79413000	Strong transcription	Primary T cells from cord blood	blood
8	chr5:79409400-79413000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr5:79409400-79413000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr5:79409400-79417600	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr5:79409800-79420800	Weak transcription	Thymus	Thymus
12	chr5:79410000-79430800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr5:79410200-79417400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr5:79410400-79413400	Weak transcription	Fetal Intestine Small	intestine
15	chr5:79410400-79414000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr5:79410600-79412400	Enhancers	Fetal Heart	heart
17	chr5:79411000-79413000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr5:79411000-79413200	Weak transcription	Fetal Thymus	thymus
19	chr5:79411000-79413800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
20	chr5:79411200-79413600	Weak transcription	Fetal Lung	lung
21	chr5:79411400-79413800	Enhancers	Primary T helper cells PMA-I stimulated	--
22	chr5:79411600-79412400	Genic enhancers	Primary T helper cells fromperipheralblood	blood
23	chr5:79411600-79413600	Enhancers	Primary T killer memory cells from peripheral blood	blood
24	chr5:79411800-79412800	Enhancers	Fetal Muscle Leg	muscle
25	chr5:79411800-79414000	Enhancers	Primary T cells fromperipheralblood	blood
26	chr5:79411800-79414400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
27	chr5:79411800-79415800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
28	chr5:79412000-79412400	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr5:79412000-79412600	Enhancers	HUES6 Cell Line	embryonic stem cell
30	chr5:79412000-79413200	Enhancers	Primary T helper naive cells from peripheral blood	blood
31	chr5:79412200-79412600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr5:79412200-79412600	Enhancers	Left Ventricle	heart
33	chr5:79412200-79413400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr5:79412200-79413800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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